miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19202 5' -58.6 NC_004684.1 + 35514 1.07 0.000795
Target:  5'- gGAGCACCGGCGCUACUGCACCGAGUGc -3'
miRNA:   3'- -CUCGUGGCCGCGAUGACGUGGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 2946 0.84 0.034595
Target:  5'- cGAGCACCGaggccaucggcGCGCUGCUGUugCGGGUGg -3'
miRNA:   3'- -CUCGUGGC-----------CGCGAUGACGugGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 10811 0.77 0.112884
Target:  5'- cGGCAuCCGGCgGCUggGCcGCACCGAGUGa -3'
miRNA:   3'- cUCGU-GGCCG-CGA--UGaCGUGGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 626 0.76 0.146939
Target:  5'- cGAGUACC-GCGCcgaggucgccggggUGCUGUACCGGGUGg -3'
miRNA:   3'- -CUCGUGGcCGCG--------------AUGACGUGGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 7417 0.75 0.156289
Target:  5'- cGGCGCUGGCGCUACcagGCACUGAc-- -3'
miRNA:   3'- cUCGUGGCCGCGAUGa--CGUGGCUcac -5'
19202 5' -58.6 NC_004684.1 + 42383 0.75 0.16052
Target:  5'- -uGCACCGGCGCUGagcGCgACCGGGUu -3'
miRNA:   3'- cuCGUGGCCGCGAUga-CG-UGGCUCAc -5'
19202 5' -58.6 NC_004684.1 + 28089 0.74 0.198227
Target:  5'- gGGGCGCUcguuaGGCGa-GCUGCACCGAGUc -3'
miRNA:   3'- -CUCGUGG-----CCGCgaUGACGUGGCUCAc -5'
19202 5' -58.6 NC_004684.1 + 40475 0.74 0.20345
Target:  5'- gGGGUcUCGGCGgU-CUGCGCCGAGUGc -3'
miRNA:   3'- -CUCGuGGCCGCgAuGACGUGGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 11960 0.73 0.219838
Target:  5'- aGAcCACCGGCGC-AC-GCGCUGGGUGg -3'
miRNA:   3'- -CUcGUGGCCGCGaUGaCGUGGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 5775 0.72 0.243428
Target:  5'- gGGGCGCaGcGCGCUACUGCGCCaGGcGUGc -3'
miRNA:   3'- -CUCGUGgC-CGCGAUGACGUGG-CU-CAC- -5'
19202 5' -58.6 NC_004684.1 + 46836 0.72 0.243428
Target:  5'- cGGCaACCGGCGCUcaGCUGCGgCGuAGUa -3'
miRNA:   3'- cUCG-UGGCCGCGA--UGACGUgGC-UCAc -5'
19202 5' -58.6 NC_004684.1 + 35089 0.72 0.275832
Target:  5'- -uGCACCGGCGUcagGCacaGCGCCGAGc- -3'
miRNA:   3'- cuCGUGGCCGCGa--UGa--CGUGGCUCac -5'
19202 5' -58.6 NC_004684.1 + 25019 0.71 0.282018
Target:  5'- cAGCGCCGGUGCaGCUggaggcgGCAUCGAcGUGg -3'
miRNA:   3'- cUCGUGGCCGCGaUGA-------CGUGGCU-CAC- -5'
19202 5' -58.6 NC_004684.1 + 25192 0.71 0.29688
Target:  5'- uGGUugGCCaGGCGCUG--GCACCGGGUGg -3'
miRNA:   3'- cUCG--UGG-CCGCGAUgaCGUGGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 29615 0.71 0.29688
Target:  5'- aGGCAgCGGCGUgcaGCUGCACCGcGaUGg -3'
miRNA:   3'- cUCGUgGCCGCGa--UGACGUGGCuC-AC- -5'
19202 5' -58.6 NC_004684.1 + 31072 0.7 0.319155
Target:  5'- cGGCACCGGCGagUugUuggucCACCGGGUGg -3'
miRNA:   3'- cUCGUGGCCGCg-AugAc----GUGGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 32294 0.7 0.319155
Target:  5'- uGGCGCuCGGCGCUGugcCUGaCGCCG-GUGc -3'
miRNA:   3'- cUCGUG-GCCGCGAU---GAC-GUGGCuCAC- -5'
19202 5' -58.6 NC_004684.1 + 1629 0.7 0.326077
Target:  5'- -uGCACCGGCGCaACcggGUACCGgcgcccaAGUGg -3'
miRNA:   3'- cuCGUGGCCGCGaUGa--CGUGGC-------UCAC- -5'
19202 5' -58.6 NC_004684.1 + 58768 0.7 0.326853
Target:  5'- cGAGgAUCGGCGgUGCcggUGCACCGGGc- -3'
miRNA:   3'- -CUCgUGGCCGCgAUG---ACGUGGCUCac -5'
19202 5' -58.6 NC_004684.1 + 26996 0.7 0.339455
Target:  5'- cGAGCGCggcgGGCGCgGCgaucaacagccagGCACCGGGUGc -3'
miRNA:   3'- -CUCGUGg---CCGCGaUGa------------CGUGGCUCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.