miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19202 5' -58.6 NC_004684.1 + 626 0.76 0.146939
Target:  5'- cGAGUACC-GCGCcgaggucgccggggUGCUGUACCGGGUGg -3'
miRNA:   3'- -CUCGUGGcCGCG--------------AUGACGUGGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 1629 0.7 0.326077
Target:  5'- -uGCACCGGCGCaACcggGUACCGgcgcccaAGUGg -3'
miRNA:   3'- cuCGUGGCCGCGaUGa--CGUGGC-------UCAC- -5'
19202 5' -58.6 NC_004684.1 + 1978 0.68 0.440021
Target:  5'- cAGCGCCuGGCGCgcgaaccgcguucugGCaGCGCCuGGGUGg -3'
miRNA:   3'- cUCGUGG-CCGCGa--------------UGaCGUGG-CUCAC- -5'
19202 5' -58.6 NC_004684.1 + 2526 0.66 0.559707
Target:  5'- cGGCACugCGGaCGCUGCgGCACCuGcGUGg -3'
miRNA:   3'- cUCGUG--GCC-GCGAUGaCGUGG-CuCAC- -5'
19202 5' -58.6 NC_004684.1 + 2946 0.84 0.034595
Target:  5'- cGAGCACCGaggccaucggcGCGCUGCUGUugCGGGUGg -3'
miRNA:   3'- -CUCGUGGC-----------CGCGAUGACGugGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 4286 0.68 0.467945
Target:  5'- aGGGC-CUGGUGCUGC--CACaCGAGUGg -3'
miRNA:   3'- -CUCGuGGCCGCGAUGacGUG-GCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 4569 0.66 0.570263
Target:  5'- aGGC-CaucgaGGCGCUGCUGCACuCGccacccGGUGu -3'
miRNA:   3'- cUCGuGg----CCGCGAUGACGUG-GC------UCAC- -5'
19202 5' -58.6 NC_004684.1 + 5317 0.66 0.59151
Target:  5'- -cGCGCUGGCGaccgUGCaGCAgUGGGUGg -3'
miRNA:   3'- cuCGUGGCCGCg---AUGaCGUgGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 5775 0.72 0.243428
Target:  5'- gGGGCGCaGcGCGCUACUGCGCCaGGcGUGc -3'
miRNA:   3'- -CUCGUGgC-CGCGAUGACGUGG-CU-CAC- -5'
19202 5' -58.6 NC_004684.1 + 5943 0.7 0.350768
Target:  5'- cGAGCACCGGCgGCgagACaaUGCcGCCG-GUGu -3'
miRNA:   3'- -CUCGUGGCCG-CGa--UG--ACG-UGGCuCAC- -5'
19202 5' -58.6 NC_004684.1 + 6773 0.69 0.411249
Target:  5'- -cGCAUgGGCGacg-UGCGCCGGGUGa -3'
miRNA:   3'- cuCGUGgCCGCgaugACGUGGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 7417 0.75 0.156289
Target:  5'- cGGCGCUGGCGCUACcagGCACUGAc-- -3'
miRNA:   3'- cUCGUGGCCGCGAUGa--CGUGGCUcac -5'
19202 5' -58.6 NC_004684.1 + 7788 0.7 0.34266
Target:  5'- cGAGCAUUGGUGCgcgggaUGUgACCGGGUGg -3'
miRNA:   3'- -CUCGUGGCCGCGaug---ACG-UGGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 8281 0.66 0.580866
Target:  5'- cGAcCugCGGCGCUACcacgGCAUCGAa-- -3'
miRNA:   3'- -CUcGugGCCGCGAUGa---CGUGGCUcac -5'
19202 5' -58.6 NC_004684.1 + 10811 0.77 0.112884
Target:  5'- cGGCAuCCGGCgGCUggGCcGCACCGAGUGa -3'
miRNA:   3'- cUCGU-GGCCG-CGA--UGaCGUGGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 11591 0.7 0.359011
Target:  5'- cAGCccGCCGGUGCgccuggACgacgGCACCGAGcUGg -3'
miRNA:   3'- cUCG--UGGCCGCGa-----UGa---CGUGGCUC-AC- -5'
19202 5' -58.6 NC_004684.1 + 11960 0.73 0.219838
Target:  5'- aGAcCACCGGCGC-AC-GCGCUGGGUGg -3'
miRNA:   3'- -CUcGUGGCCGCGaUGaCGUGGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 13551 0.67 0.528399
Target:  5'- -uGCGCCuGGCggccaucgGCUACUGCGUCGAGg- -3'
miRNA:   3'- cuCGUGG-CCG--------CGAUGACGUGGCUCac -5'
19202 5' -58.6 NC_004684.1 + 13601 0.66 0.570263
Target:  5'- cAGgGCUGGcCGgaACU-CACCGAGUGg -3'
miRNA:   3'- cUCgUGGCC-GCgaUGAcGUGGCUCAC- -5'
19202 5' -58.6 NC_004684.1 + 15079 0.69 0.393317
Target:  5'- -cGCACC-GCGCaGCUGCGCgCGAuGUGu -3'
miRNA:   3'- cuCGUGGcCGCGaUGACGUG-GCU-CAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.