miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19209 3' -59.5 NC_004684.1 + 1400 0.66 0.525711
Target:  5'- gGCGGCUaccggUA-CGGGCgGCugAGCc -3'
miRNA:   3'- aUGCCGAga---AUcGCCCGgCGugUCGc -5'
19209 3' -59.5 NC_004684.1 + 5859 0.66 0.495224
Target:  5'- gGCGuGCgacUGGCaGGCCGgGCAGCa -3'
miRNA:   3'- aUGC-CGagaAUCGcCCGGCgUGUCGc -5'
19209 3' -59.5 NC_004684.1 + 8160 0.67 0.446313
Target:  5'- gUGCGGgUCU--GCGGGUcaCGCuCGGCGg -3'
miRNA:   3'- -AUGCCgAGAauCGCCCG--GCGuGUCGC- -5'
19209 3' -59.5 NC_004684.1 + 9466 0.66 0.536033
Target:  5'- --gGGCgCUggagcUGGCGGGCaaGCGCAGCc -3'
miRNA:   3'- augCCGaGA-----AUCGCCCGg-CGUGUCGc -5'
19209 3' -59.5 NC_004684.1 + 10110 0.67 0.447265
Target:  5'- gUGCGGCUCgccgUcacaggccgagcuguGCGGGCCG-ACGGUGc -3'
miRNA:   3'- -AUGCCGAGa---Au--------------CGCCCGGCgUGUCGC- -5'
19209 3' -59.5 NC_004684.1 + 10809 0.7 0.310149
Target:  5'- aGCGGCaUCcggcGGCuGGGCCGCACcgAGUGa -3'
miRNA:   3'- aUGCCG-AGaa--UCG-CCCGGCGUG--UCGC- -5'
19209 3' -59.5 NC_004684.1 + 12058 0.7 0.285618
Target:  5'- gGCGGCUCgccuggccgccgAGCGcgacgaggugcuGGcCCGCGCGGCGg -3'
miRNA:   3'- aUGCCGAGaa----------UCGC------------CC-GGCGUGUCGC- -5'
19209 3' -59.5 NC_004684.1 + 18416 0.68 0.418291
Target:  5'- gGCGGCcC--GGCGGG-CGCAcCGGCGg -3'
miRNA:   3'- aUGCCGaGaaUCGCCCgGCGU-GUCGC- -5'
19209 3' -59.5 NC_004684.1 + 22356 0.66 0.515465
Target:  5'- gGCGGCggc-GGCGgcGGUCGCGCuGGCGg -3'
miRNA:   3'- aUGCCGagaaUCGC--CCGGCGUG-UCGC- -5'
19209 3' -59.5 NC_004684.1 + 22621 0.66 0.536033
Target:  5'- uUACGGCgCUgugGGa-GGCCGCcgcCAGCGg -3'
miRNA:   3'- -AUGCCGaGAa--UCgcCCGGCGu--GUCGC- -5'
19209 3' -59.5 NC_004684.1 + 23000 0.67 0.475351
Target:  5'- aACGGC-CUgGGCcgacuGGCCGCcgucgGCAGCGa -3'
miRNA:   3'- aUGCCGaGAaUCGc----CCGGCG-----UGUCGC- -5'
19209 3' -59.5 NC_004684.1 + 24501 0.67 0.475351
Target:  5'- gGCGGUgcc--GCaGGGCCGCGCguucGGCGg -3'
miRNA:   3'- aUGCCGagaauCG-CCCGGCGUG----UCGC- -5'
19209 3' -59.5 NC_004684.1 + 24537 0.71 0.274615
Target:  5'- cUACGGCgguguGcCGGGCCGCgAUAGCGu -3'
miRNA:   3'- -AUGCCGagaauC-GCCCGGCG-UGUCGC- -5'
19209 3' -59.5 NC_004684.1 + 26455 0.66 0.485239
Target:  5'- gUACGGCggcacGCcuGGCCGCgACAGCGu -3'
miRNA:   3'- -AUGCCGagaauCGc-CCGGCG-UGUCGC- -5'
19209 3' -59.5 NC_004684.1 + 28073 0.68 0.409191
Target:  5'- gGCGGUg--UGGcCGGGCCGC-CGcGCGa -3'
miRNA:   3'- aUGCCGagaAUC-GCCCGGCGuGU-CGC- -5'
19209 3' -59.5 NC_004684.1 + 31168 0.68 0.409191
Target:  5'- aGCGGuCUCggcGGUGGccacGCUGCGCAGCu -3'
miRNA:   3'- aUGCC-GAGaa-UCGCC----CGGCGUGUCGc -5'
19209 3' -59.5 NC_004684.1 + 33525 0.72 0.236365
Target:  5'- gGCGGCUau--GCgGGGUCGUACGGCa -3'
miRNA:   3'- aUGCCGAgaauCG-CCCGGCGUGUCGc -5'
19209 3' -59.5 NC_004684.1 + 33810 0.7 0.280762
Target:  5'- aGCGGUUCggcgucGGCGGGCgGUgugcccgGCGGCGg -3'
miRNA:   3'- aUGCCGAGaa----UCGCCCGgCG-------UGUCGC- -5'
19209 3' -59.5 NC_004684.1 + 37454 1.06 0.000716
Target:  5'- gUACGGCUCUUAGCGGGCCGCACAGCGc -3'
miRNA:   3'- -AUGCCGAGAAUCGCCCGGCGUGUCGC- -5'
19209 3' -59.5 NC_004684.1 + 39306 0.7 0.310149
Target:  5'- -cCGGU-----GCGGGUCGCGCGGCGg -3'
miRNA:   3'- auGCCGagaauCGCCCGGCGUGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.