miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19209 3' -59.5 NC_004684.1 + 63228 0.66 0.485239
Target:  5'- gGCGGCUCguugccgGGCGucGGCCcgaGCAGCu -3'
miRNA:   3'- aUGCCGAGaa-----UCGC--CCGGcg-UGUCGc -5'
19209 3' -59.5 NC_004684.1 + 18416 0.68 0.418291
Target:  5'- gGCGGCcC--GGCGGG-CGCAcCGGCGg -3'
miRNA:   3'- aUGCCGaGaaUCGCCCgGCGU-GUCGC- -5'
19209 3' -59.5 NC_004684.1 + 42187 0.67 0.427514
Target:  5'- cGCGGUgagcAGUGGGCCGUGgAGCu -3'
miRNA:   3'- aUGCCGagaaUCGCCCGGCGUgUCGc -5'
19209 3' -59.5 NC_004684.1 + 45834 0.67 0.455885
Target:  5'- gACGGC-CUcGGCGGucauGCCGCGCucguugauGGCGu -3'
miRNA:   3'- aUGCCGaGAaUCGCC----CGGCGUG--------UCGC- -5'
19209 3' -59.5 NC_004684.1 + 40360 0.67 0.465565
Target:  5'- gGCGGC-CUUGGCcuuggGGGCCu--CGGCGg -3'
miRNA:   3'- aUGCCGaGAAUCG-----CCCGGcguGUCGC- -5'
19209 3' -59.5 NC_004684.1 + 40711 0.67 0.465565
Target:  5'- gGCGGCgg-UGGcCGGGacgaccaGCGCGGCGg -3'
miRNA:   3'- aUGCCGagaAUC-GCCCgg-----CGUGUCGC- -5'
19209 3' -59.5 NC_004684.1 + 23000 0.67 0.475351
Target:  5'- aACGGC-CUgGGCcgacuGGCCGCcgucgGCAGCGa -3'
miRNA:   3'- aUGCCGaGAaUCGc----CCGGCG-----UGUCGC- -5'
19209 3' -59.5 NC_004684.1 + 24501 0.67 0.475351
Target:  5'- gGCGGUgcc--GCaGGGCCGCGCguucGGCGg -3'
miRNA:   3'- aUGCCGagaauCG-CCCGGCGUG----UCGC- -5'
19209 3' -59.5 NC_004684.1 + 26455 0.66 0.485239
Target:  5'- gUACGGCggcacGCcuGGCCGCgACAGCGu -3'
miRNA:   3'- -AUGCCGagaauCGc-CCGGCG-UGUCGC- -5'
19209 3' -59.5 NC_004684.1 + 42551 0.68 0.418291
Target:  5'- gACGGCguucggCUUcGGCGuGGCCGCcaagaagacCAGCGa -3'
miRNA:   3'- aUGCCGa-----GAA-UCGC-CCGGCGu--------GUCGC- -5'
19209 3' -59.5 NC_004684.1 + 59132 0.68 0.409191
Target:  5'- cGCGGCgcacgUGGCGGGaCUGCAuguuguCGGCGc -3'
miRNA:   3'- aUGCCGaga--AUCGCCC-GGCGU------GUCGC- -5'
19209 3' -59.5 NC_004684.1 + 28073 0.68 0.409191
Target:  5'- gGCGGUg--UGGcCGGGCCGC-CGcGCGa -3'
miRNA:   3'- aUGCCGagaAUC-GCCCGGCGuGU-CGC- -5'
19209 3' -59.5 NC_004684.1 + 66507 0.75 0.136234
Target:  5'- gGCGGC-CUc-GCGGGCCGCcuuCAGCGc -3'
miRNA:   3'- aUGCCGaGAauCGCCCGGCGu--GUCGC- -5'
19209 3' -59.5 NC_004684.1 + 33525 0.72 0.236365
Target:  5'- gGCGGCUau--GCgGGGUCGUACGGCa -3'
miRNA:   3'- aUGCCGAgaauCG-CCCGGCGUGUCGc -5'
19209 3' -59.5 NC_004684.1 + 24537 0.71 0.274615
Target:  5'- cUACGGCgguguGcCGGGCCGCgAUAGCGu -3'
miRNA:   3'- -AUGCCGagaauC-GCCCGGCG-UGUCGC- -5'
19209 3' -59.5 NC_004684.1 + 33810 0.7 0.280762
Target:  5'- aGCGGUUCggcgucGGCGGGCgGUgugcccgGCGGCGg -3'
miRNA:   3'- aUGCCGAGaa----UCGCCCGgCG-------UGUCGC- -5'
19209 3' -59.5 NC_004684.1 + 12058 0.7 0.285618
Target:  5'- gGCGGCUCgccuggccgccgAGCGcgacgaggugcuGGcCCGCGCGGCGg -3'
miRNA:   3'- aUGCCGAGaa----------UCGC------------CC-GGCGUGUCGC- -5'
19209 3' -59.5 NC_004684.1 + 40390 0.7 0.310149
Target:  5'- gGCGGC-CUUcGGCaGGCCGguCAGCc -3'
miRNA:   3'- aUGCCGaGAA-UCGcCCGGCguGUCGc -5'
19209 3' -59.5 NC_004684.1 + 10809 0.7 0.310149
Target:  5'- aGCGGCaUCcggcGGCuGGGCCGCACcgAGUGa -3'
miRNA:   3'- aUGCCG-AGaa--UCG-CCCGGCGUG--UCGC- -5'
19209 3' -59.5 NC_004684.1 + 43804 0.68 0.391365
Target:  5'- uUACGGU----GGUGGcGCgCGCGCAGCGa -3'
miRNA:   3'- -AUGCCGagaaUCGCC-CG-GCGUGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.