miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19209 5' -57.5 NC_004684.1 + 66910 0.66 0.668882
Target:  5'- gUCG-GUGCugccGACCuCGCUgGCCCGGUUGu -3'
miRNA:   3'- gAGCaCAUG----CUGG-GCGG-UGGGCCAAU- -5'
19209 5' -57.5 NC_004684.1 + 5987 0.66 0.668882
Target:  5'- gUCaUGUACggcgggacgGACCCGCCACCUGa--- -3'
miRNA:   3'- gAGcACAUG---------CUGGGCGGUGGGCcaau -5'
19209 5' -57.5 NC_004684.1 + 42607 0.66 0.668882
Target:  5'- cCUUGgccGUAuCGACCaGCgGCCCGGUg- -3'
miRNA:   3'- -GAGCa--CAU-GCUGGgCGgUGGGCCAau -5'
19209 5' -57.5 NC_004684.1 + 42748 0.66 0.668882
Target:  5'- -aCGUGguugGCGGCCUgGCCGgugcgaucCCCGGUUu -3'
miRNA:   3'- gaGCACa---UGCUGGG-CGGU--------GGGCCAAu -5'
19209 5' -57.5 NC_004684.1 + 27621 0.66 0.63693
Target:  5'- aUCGaGaACGGCCaggacgccaUGCCACCCGGUc- -3'
miRNA:   3'- gAGCaCaUGCUGG---------GCGGUGGGCCAau -5'
19209 5' -57.5 NC_004684.1 + 66656 0.66 0.626258
Target:  5'- cCUCGgcgGCGGCCCgGUCACCggCGGUg- -3'
miRNA:   3'- -GAGCacaUGCUGGG-CGGUGG--GCCAau -5'
19209 5' -57.5 NC_004684.1 + 61920 0.66 0.626258
Target:  5'- aUCGcgggGUGCGggccacggcACCCGCCggGCCUGGUg- -3'
miRNA:   3'- gAGCa---CAUGC---------UGGGCGG--UGGGCCAau -5'
19209 5' -57.5 NC_004684.1 + 66845 0.67 0.615592
Target:  5'- cCUCGgugGCGGCCuCGaCCGCCUGGc-- -3'
miRNA:   3'- -GAGCacaUGCUGG-GC-GGUGGGCCaau -5'
19209 5' -57.5 NC_004684.1 + 48709 0.67 0.603874
Target:  5'- -gCGUGcgGCGGCCCugccagcGCUugCCGGUg- -3'
miRNA:   3'- gaGCACa-UGCUGGG-------CGGugGGCCAau -5'
19209 5' -57.5 NC_004684.1 + 42171 0.68 0.562626
Target:  5'- uUCGcGUccaGCGugCCggugaaGCCACCCGGUg- -3'
miRNA:   3'- gAGCaCA---UGCugGG------CGGUGGGCCAau -5'
19209 5' -57.5 NC_004684.1 + 4574 0.68 0.551117
Target:  5'- aUCGag-GCGcugcugcACUCGCCACCCGGUg- -3'
miRNA:   3'- gAGCacaUGC-------UGGGCGGUGGGCCAau -5'
19209 5' -57.5 NC_004684.1 + 28774 0.68 0.541755
Target:  5'- gCUCcagGUcaGCGGCauGCCACCCGGUUc -3'
miRNA:   3'- -GAGca-CA--UGCUGggCGGUGGGCCAAu -5'
19209 5' -57.5 NC_004684.1 + 2049 0.68 0.51096
Target:  5'- uUCGUGgacUACGGCCagCGCCACgUGGUg- -3'
miRNA:   3'- gAGCAC---AUGCUGG--GCGGUGgGCCAau -5'
19209 5' -57.5 NC_004684.1 + 66457 0.69 0.500855
Target:  5'- --gGUG-GCGGCguugucuccacgCCGCCACCCGGUg- -3'
miRNA:   3'- gagCACaUGCUG------------GGCGGUGGGCCAau -5'
19209 5' -57.5 NC_004684.1 + 969 0.69 0.480916
Target:  5'- gUCGUaccuGUACggcgggacgGACCCGCCGCCCGa--- -3'
miRNA:   3'- gAGCA----CAUG---------CUGGGCGGUGGGCcaau -5'
19209 5' -57.5 NC_004684.1 + 37543 0.69 0.471093
Target:  5'- -gCGgcgAUGACCCGCCgguggACCCGGUg- -3'
miRNA:   3'- gaGCacaUGCUGGGCGG-----UGGGCCAau -5'
19209 5' -57.5 NC_004684.1 + 28404 0.69 0.471093
Target:  5'- -aCGcGUACGugCCGCCgguugACCUGGUg- -3'
miRNA:   3'- gaGCaCAUGCugGGCGG-----UGGGCCAau -5'
19209 5' -57.5 NC_004684.1 + 60059 0.7 0.442256
Target:  5'- aCUCGUGgcgcGCGGCCCGgCgGCCCGu--- -3'
miRNA:   3'- -GAGCACa---UGCUGGGC-GgUGGGCcaau -5'
19209 5' -57.5 NC_004684.1 + 37635 0.7 0.442256
Target:  5'- gUCG-GUGCGcugGCCaugGCCGCCCGGUc- -3'
miRNA:   3'- gAGCaCAUGC---UGGg--CGGUGGGCCAau -5'
19209 5' -57.5 NC_004684.1 + 24953 0.7 0.432867
Target:  5'- cCUCG-GUGcCGACCCgGCCACgcuuCCGGUg- -3'
miRNA:   3'- -GAGCaCAU-GCUGGG-CGGUG----GGCCAau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.