miRNA display CGI


Results 21 - 40 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19210 3' -56.2 NC_004684.1 + 1083 0.66 0.72427
Target:  5'- ---uGGACGugauCGGUGACCAgGCCg -3'
miRNA:   3'- aguuCCUGUucc-GCCACUGGUgCGGg -5'
19210 3' -56.2 NC_004684.1 + 56747 0.66 0.723232
Target:  5'- --cGGGAaccggcaccagacCAcGGUGGUGACgACGCCg -3'
miRNA:   3'- aguUCCU-------------GUuCCGCCACUGgUGCGGg -5'
19210 3' -56.2 NC_004684.1 + 57566 0.66 0.72427
Target:  5'- aUCGAcGGCAAGaCGGUGGCCuugaGCGUCg -3'
miRNA:   3'- -AGUUcCUGUUCcGCCACUGG----UGCGGg -5'
19210 3' -56.2 NC_004684.1 + 7054 0.66 0.703354
Target:  5'- ---uGGcCGAacGcGCGGUGAUCGCGCUCg -3'
miRNA:   3'- aguuCCuGUU--C-CGCCACUGGUGCGGG- -5'
19210 3' -56.2 NC_004684.1 + 433 0.66 0.734602
Target:  5'- cCGAGGuCGAcGGCuGGggcgaGAUCGCGCCg -3'
miRNA:   3'- aGUUCCuGUU-CCG-CCa----CUGGUGCGGg -5'
19210 3' -56.2 NC_004684.1 + 18356 0.66 0.734602
Target:  5'- cCGAGGAgGAGGagccugcgcCGGUGGCCGaucUGUUCa -3'
miRNA:   3'- aGUUCCUgUUCC---------GCCACUGGU---GCGGG- -5'
19210 3' -56.2 NC_004684.1 + 14922 0.66 0.744836
Target:  5'- -gGAGGu---GGUGGcGGCCAUGCCg -3'
miRNA:   3'- agUUCCuguuCCGCCaCUGGUGCGGg -5'
19210 3' -56.2 NC_004684.1 + 10569 0.66 0.71385
Target:  5'- --cAGGugGucGUGGUcgauGGCCACGUCCg -3'
miRNA:   3'- aguUCCugUucCGCCA----CUGGUGCGGG- -5'
19210 3' -56.2 NC_004684.1 + 4143 0.66 0.71385
Target:  5'- gUCGuGGACAAGcuGCucgGGCCgACGCCCg -3'
miRNA:   3'- -AGUuCCUGUUC--CGccaCUGG-UGCGGG- -5'
19210 3' -56.2 NC_004684.1 + 18140 0.66 0.734602
Target:  5'- aCAuGGACGcgccgcugugGGGCGacGUG-CCgACGCCCg -3'
miRNA:   3'- aGUuCCUGU----------UCCGC--CACuGG-UGCGGG- -5'
19210 3' -56.2 NC_004684.1 + 33898 0.66 0.703354
Target:  5'- gCGAGuACAGGGCcGccGCCGCGUCCa -3'
miRNA:   3'- aGUUCcUGUUCCGcCacUGGUGCGGG- -5'
19210 3' -56.2 NC_004684.1 + 46120 0.66 0.734602
Target:  5'- ---cGGGCGcgcgugccgGGGUGGuUGACCugGCgCa -3'
miRNA:   3'- aguuCCUGU---------UCCGCC-ACUGGugCGgG- -5'
19210 3' -56.2 NC_004684.1 + 22444 0.66 0.71385
Target:  5'- cCGucGGCGcGGCGGcGAUCcCGCCCg -3'
miRNA:   3'- aGUucCUGUuCCGCCaCUGGuGCGGG- -5'
19210 3' -56.2 NC_004684.1 + 32664 0.66 0.71385
Target:  5'- gCAAGG-CcuGGCGGcggcaUGGCUACGgCCu -3'
miRNA:   3'- aGUUCCuGuuCCGCC-----ACUGGUGCgGG- -5'
19210 3' -56.2 NC_004684.1 + 64219 0.66 0.703354
Target:  5'- aCAccuGGGACAcGGCGuUGGCCuCGgCCa -3'
miRNA:   3'- aGU---UCCUGUuCCGCcACUGGuGCgGG- -5'
19210 3' -56.2 NC_004684.1 + 3941 0.66 0.754962
Target:  5'- ---cGGAacuGGGCGGcgaaggcGACCACGCUg -3'
miRNA:   3'- aguuCCUgu-UCCGCCa------CUGGUGCGGg -5'
19210 3' -56.2 NC_004684.1 + 12790 0.66 0.703354
Target:  5'- aCGAGGACAAcGGCacccccgccGACgaCGCGCCCg -3'
miRNA:   3'- aGUUCCUGUU-CCGcca------CUG--GUGCGGG- -5'
19210 3' -56.2 NC_004684.1 + 51602 0.66 0.703354
Target:  5'- cCAAGGuCuccAGGUGuuccuUGGCCGCGCUCg -3'
miRNA:   3'- aGUUCCuGu--UCCGCc----ACUGGUGCGGG- -5'
19210 3' -56.2 NC_004684.1 + 29341 0.66 0.703354
Target:  5'- cCAAGcGCuggGAGGCGGUgGACC-UGUCCg -3'
miRNA:   3'- aGUUCcUG---UUCCGCCA-CUGGuGCGGG- -5'
19210 3' -56.2 NC_004684.1 + 8544 0.66 0.71385
Target:  5'- ---cGGACGAGGUGG--ACCuguGCGCCg -3'
miRNA:   3'- aguuCCUGUUCCGCCacUGG---UGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.