Results 1 - 20 of 146 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19210 | 3' | -56.2 | NC_004684.1 | + | 55874 | 0.66 | 0.734602 |
Target: 5'- cCAAGGugGccgGGGCaugGACC-UGCCCg -3' miRNA: 3'- aGUUCCugU---UCCGccaCUGGuGCGGG- -5' |
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19210 | 3' | -56.2 | NC_004684.1 | + | 1083 | 0.66 | 0.72427 |
Target: 5'- ---uGGACGugauCGGUGACCAgGCCg -3' miRNA: 3'- aguuCCUGUucc-GCCACUGGUgCGGg -5' |
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19210 | 3' | -56.2 | NC_004684.1 | + | 56747 | 0.66 | 0.723232 |
Target: 5'- --cGGGAaccggcaccagacCAcGGUGGUGACgACGCCg -3' miRNA: 3'- aguUCCU-------------GUuCCGCCACUGgUGCGGg -5' |
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19210 | 3' | -56.2 | NC_004684.1 | + | 15123 | 0.66 | 0.734602 |
Target: 5'- gUCAccGGGACGcuGGGCc-UGAuCCACGCCa -3' miRNA: 3'- -AGU--UCCUGU--UCCGccACU-GGUGCGGg -5' |
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19210 | 3' | -56.2 | NC_004684.1 | + | 5848 | 0.66 | 0.72427 |
Target: 5'- uUCGAGGACcAGGCGuGcGACuggCAgGCCg -3' miRNA: 3'- -AGUUCCUGuUCCGC-CaCUG---GUgCGGg -5' |
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19210 | 3' | -56.2 | NC_004684.1 | + | 12790 | 0.66 | 0.703354 |
Target: 5'- aCGAGGACAAcGGCacccccgccGACgaCGCGCCCg -3' miRNA: 3'- aGUUCCUGUU-CCGcca------CUG--GUGCGGG- -5' |
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19210 | 3' | -56.2 | NC_004684.1 | + | 51602 | 0.66 | 0.703354 |
Target: 5'- cCAAGGuCuccAGGUGuuccuUGGCCGCGCUCg -3' miRNA: 3'- aGUUCCuGu--UCCGCc----ACUGGUGCGGG- -5' |
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19210 | 3' | -56.2 | NC_004684.1 | + | 64219 | 0.66 | 0.703354 |
Target: 5'- aCAccuGGGACAcGGCGuUGGCCuCGgCCa -3' miRNA: 3'- aGU---UCCUGUuCCGCcACUGGuGCgGG- -5' |
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19210 | 3' | -56.2 | NC_004684.1 | + | 30181 | 0.66 | 0.734602 |
Target: 5'- gUCGGcGGCGAGcUGGUGGCCACcaaaCCCg -3' miRNA: 3'- -AGUUcCUGUUCcGCCACUGGUGc---GGG- -5' |
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19210 | 3' | -56.2 | NC_004684.1 | + | 29341 | 0.66 | 0.703354 |
Target: 5'- cCAAGcGCuggGAGGCGGUgGACC-UGUCCg -3' miRNA: 3'- aGUUCcUG---UUCCGCCA-CUGGuGCGGG- -5' |
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19210 | 3' | -56.2 | NC_004684.1 | + | 22444 | 0.66 | 0.71385 |
Target: 5'- cCGucGGCGcGGCGGcGAUCcCGCCCg -3' miRNA: 3'- aGUucCUGUuCCGCCaCUGGuGCGGG- -5' |
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19210 | 3' | -56.2 | NC_004684.1 | + | 38793 | 0.66 | 0.734602 |
Target: 5'- aCAAgcuGGGCAuuuccagcGGCGGUG-CC-CGCCUg -3' miRNA: 3'- aGUU---CCUGUu-------CCGCCACuGGuGCGGG- -5' |
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19210 | 3' | -56.2 | NC_004684.1 | + | 18911 | 0.66 | 0.72427 |
Target: 5'- gCGGGGuCGcGGCGcaucaGACCAgGCCCu -3' miRNA: 3'- aGUUCCuGUuCCGCca---CUGGUgCGGG- -5' |
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19210 | 3' | -56.2 | NC_004684.1 | + | 32664 | 0.66 | 0.71385 |
Target: 5'- gCAAGG-CcuGGCGGcggcaUGGCUACGgCCu -3' miRNA: 3'- aGUUCCuGuuCCGCC-----ACUGGUGCgGG- -5' |
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19210 | 3' | -56.2 | NC_004684.1 | + | 20870 | 0.66 | 0.72427 |
Target: 5'- cCGAGGGCAAGGaCcGUG-CgGCGCUg -3' miRNA: 3'- aGUUCCUGUUCC-GcCACuGgUGCGGg -5' |
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19210 | 3' | -56.2 | NC_004684.1 | + | 9705 | 0.66 | 0.733573 |
Target: 5'- aUCGAcGGCGAGGUGuccugauGUGGCCGCuaCCCg -3' miRNA: 3'- -AGUUcCUGUUCCGC-------CACUGGUGc-GGG- -5' |
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19210 | 3' | -56.2 | NC_004684.1 | + | 51039 | 0.66 | 0.753954 |
Target: 5'- --cAGGAUgcGGCcaccgccGGUGACgauGCGCCCg -3' miRNA: 3'- aguUCCUGuuCCG-------CCACUGg--UGCGGG- -5' |
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19210 | 3' | -56.2 | NC_004684.1 | + | 3941 | 0.66 | 0.754962 |
Target: 5'- ---cGGAacuGGGCGGcgaaggcGACCACGCUg -3' miRNA: 3'- aguuCCUgu-UCCGCCa------CUGGUGCGGg -5' |
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19210 | 3' | -56.2 | NC_004684.1 | + | 34430 | 0.66 | 0.734602 |
Target: 5'- cCGAGGACA--GCaGUGugC-UGCCCg -3' miRNA: 3'- aGUUCCUGUucCGcCACugGuGCGGG- -5' |
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19210 | 3' | -56.2 | NC_004684.1 | + | 55930 | 0.66 | 0.72427 |
Target: 5'- cCAAGGugGaccgGGGCGa-GGCCgACGCCg -3' miRNA: 3'- aGUUCCugU----UCCGCcaCUGG-UGCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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