miRNA display CGI


Results 1 - 20 of 146 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19210 3' -56.2 NC_004684.1 + 38333 1.13 0.000611
Target:  5'- cUCAAGGACAAGGCGGUGACCACGCCCa -3'
miRNA:   3'- -AGUUCCUGUUCCGCCACUGGUGCGGG- -5'
19210 3' -56.2 NC_004684.1 + 43520 0.87 0.037946
Target:  5'- gCAGGGGCGGGaGCGGUGGCUGCGCCa -3'
miRNA:   3'- aGUUCCUGUUC-CGCCACUGGUGCGGg -5'
19210 3' -56.2 NC_004684.1 + 49638 0.84 0.061588
Target:  5'- uUCGGuGACGAGGCGGuUGGCCGCGCCg -3'
miRNA:   3'- -AGUUcCUGUUCCGCC-ACUGGUGCGGg -5'
19210 3' -56.2 NC_004684.1 + 14434 0.8 0.119952
Target:  5'- cCAAGGggucaACGAGGUGGUGACCgaacgcaGCGCCUg -3'
miRNA:   3'- aGUUCC-----UGUUCCGCCACUGG-------UGCGGG- -5'
19210 3' -56.2 NC_004684.1 + 57521 0.77 0.189884
Target:  5'- ---cGGAuccCGAGGCGGUGGCC-CGCCUc -3'
miRNA:   3'- aguuCCU---GUUCCGCCACUGGuGCGGG- -5'
19210 3' -56.2 NC_004684.1 + 31166 0.76 0.210756
Target:  5'- cCAGcGGuCucGGCGGUGGCCACGCUg -3'
miRNA:   3'- aGUU-CCuGuuCCGCCACUGGUGCGGg -5'
19210 3' -56.2 NC_004684.1 + 24165 0.76 0.221916
Target:  5'- gCAGGGucCGcAGGCGGUG-CCGcCGCCCa -3'
miRNA:   3'- aGUUCCu-GU-UCCGCCACuGGU-GCGGG- -5'
19210 3' -56.2 NC_004684.1 + 26941 0.75 0.252659
Target:  5'- -gAAGGuaucgucccgauugcCAAGGCGGUGGCCaACGCCg -3'
miRNA:   3'- agUUCCu--------------GUUCCGCCACUGG-UGCGGg -5'
19210 3' -56.2 NC_004684.1 + 8711 0.75 0.261037
Target:  5'- aCGAGGACuccauGGCGGcgcUGaucccgauguucgccGCCGCGCCCg -3'
miRNA:   3'- aGUUCCUGuu---CCGCC---AC---------------UGGUGCGGG- -5'
19210 3' -56.2 NC_004684.1 + 42671 0.75 0.264979
Target:  5'- -gGAGGGCAucacGGCGGUGGCCAaccaGUUCa -3'
miRNA:   3'- agUUCCUGUu---CCGCCACUGGUg---CGGG- -5'
19210 3' -56.2 NC_004684.1 + 29401 0.75 0.270982
Target:  5'- cCGAGGACAAGGCcaucaacGUcGACCccaucguGCGCCCg -3'
miRNA:   3'- aGUUCCUGUUCCGc------CA-CUGG-------UGCGGG- -5'
19210 3' -56.2 NC_004684.1 + 29563 0.74 0.285416
Target:  5'- -uGGGGccgcugccuuACAAGGCGGUGGCCGCaCUCg -3'
miRNA:   3'- agUUCC----------UGUUCCGCCACUGGUGcGGG- -5'
19210 3' -56.2 NC_004684.1 + 52293 0.74 0.314571
Target:  5'- gCAAGGucggccucCAGGGCGGccACCGCGCCg -3'
miRNA:   3'- aGUUCCu-------GUUCCGCCacUGGUGCGGg -5'
19210 3' -56.2 NC_004684.1 + 29020 0.73 0.322203
Target:  5'- aUCuuGGGAC----UGGUGACCGCGCCCu -3'
miRNA:   3'- -AGu-UCCUGuuccGCCACUGGUGCGGG- -5'
19210 3' -56.2 NC_004684.1 + 56711 0.73 0.329972
Target:  5'- -gGGGGugAAgcuGGCGGUGcugauGCCGCGCCa -3'
miRNA:   3'- agUUCCugUU---CCGCCAC-----UGGUGCGGg -5'
19210 3' -56.2 NC_004684.1 + 38415 0.73 0.329972
Target:  5'- cCGAGaaccuggccGAUgcGGgGGUGACCACGUCCa -3'
miRNA:   3'- aGUUC---------CUGuuCCgCCACUGGUGCGGG- -5'
19210 3' -56.2 NC_004684.1 + 37790 0.73 0.343496
Target:  5'- gCAGGuGGCgAAGGCGGUGAgUguguggggcacggcGCGCCCu -3'
miRNA:   3'- aGUUC-CUG-UUCCGCCACUgG--------------UGCGGG- -5'
19210 3' -56.2 NC_004684.1 + 18956 0.73 0.345923
Target:  5'- cCGAGGugGCAAGGCGGUggagcgguuuGACCAgauuCGCCg -3'
miRNA:   3'- aGUUCC--UGUUCCGCCA----------CUGGU----GCGGg -5'
19210 3' -56.2 NC_004684.1 + 21981 0.73 0.345923
Target:  5'- cCGAGGcCAAGGUGGUGcGCCAgGgUCCg -3'
miRNA:   3'- aGUUCCuGUUCCGCCAC-UGGUgC-GGG- -5'
19210 3' -56.2 NC_004684.1 + 4996 0.73 0.354103
Target:  5'- gCGAGGGCAAGGgccCGGUG-CCGCuCCUg -3'
miRNA:   3'- aGUUCCUGUUCC---GCCACuGGUGcGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.