miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19210 3' -56.2 NC_004684.1 + 12011 0.7 0.482108
Target:  5'- --cAGGACuucgcggcGGCGGUGGCCAagGCCa -3'
miRNA:   3'- aguUCCUGuu------CCGCCACUGGUg-CGGg -5'
19210 3' -56.2 NC_004684.1 + 19460 0.72 0.379452
Target:  5'- ---cGGGC--GGCGGUGGCCcgcgcgacauGCGCCCc -3'
miRNA:   3'- aguuCCUGuuCCGCCACUGG----------UGCGGG- -5'
19210 3' -56.2 NC_004684.1 + 66452 0.72 0.388169
Target:  5'- gUCAGGGugGcGGCGuUGucuCCACGCCg -3'
miRNA:   3'- -AGUUCCugUuCCGCcACu--GGUGCGGg -5'
19210 3' -56.2 NC_004684.1 + 53179 0.72 0.388169
Target:  5'- cCGGGGAC-AGGCc--GACCGCGCCg -3'
miRNA:   3'- aGUUCCUGuUCCGccaCUGGUGCGGg -5'
19210 3' -56.2 NC_004684.1 + 49904 0.72 0.397015
Target:  5'- ---cGGACA---UGGUGAUCGCGCCCa -3'
miRNA:   3'- aguuCCUGUuccGCCACUGGUGCGGG- -5'
19210 3' -56.2 NC_004684.1 + 3047 0.71 0.415091
Target:  5'- aCGAGGcCcGGGUGGUGG-CGCGCCg -3'
miRNA:   3'- aGUUCCuGuUCCGCCACUgGUGCGGg -5'
19210 3' -56.2 NC_004684.1 + 16480 0.71 0.424317
Target:  5'- ---uGGGC-AGGCGGUGuuguuuacagcACCGCGCuCCa -3'
miRNA:   3'- aguuCCUGuUCCGCCAC-----------UGGUGCG-GG- -5'
19210 3' -56.2 NC_004684.1 + 34493 0.7 0.462403
Target:  5'- cCGAGGACAcccccgaaaauuGGGCGGUGuACCAggacaGCUa -3'
miRNA:   3'- aGUUCCUGU------------UCCGCCAC-UGGUg----CGGg -5'
19210 3' -56.2 NC_004684.1 + 14462 0.7 0.472204
Target:  5'- cCAAGGAgcuggggucgauCGAGGUGGUugccgGuACCACGCCg -3'
miRNA:   3'- aGUUCCU------------GUUCCGCCA-----C-UGGUGCGGg -5'
19210 3' -56.2 NC_004684.1 + 37790 0.73 0.343496
Target:  5'- gCAGGuGGCgAAGGCGGUGAgUguguggggcacggcGCGCCCu -3'
miRNA:   3'- aGUUC-CUG-UUCCGCCACUgG--------------UGCGGG- -5'
19210 3' -56.2 NC_004684.1 + 56711 0.73 0.329972
Target:  5'- -gGGGGugAAgcuGGCGGUGcugauGCCGCGCCa -3'
miRNA:   3'- agUUCCugUU---CCGCCAC-----UGGUGCGGg -5'
19210 3' -56.2 NC_004684.1 + 38415 0.73 0.329972
Target:  5'- cCGAGaaccuggccGAUgcGGgGGUGACCACGUCCa -3'
miRNA:   3'- aGUUC---------CUGuuCCgCCACUGGUGCGGG- -5'
19210 3' -56.2 NC_004684.1 + 43520 0.87 0.037946
Target:  5'- gCAGGGGCGGGaGCGGUGGCUGCGCCa -3'
miRNA:   3'- aGUUCCUGUUC-CGCCACUGGUGCGGg -5'
19210 3' -56.2 NC_004684.1 + 57521 0.77 0.189884
Target:  5'- ---cGGAuccCGAGGCGGUGGCC-CGCCUc -3'
miRNA:   3'- aguuCCU---GUUCCGCCACUGGuGCGGG- -5'
19210 3' -56.2 NC_004684.1 + 24165 0.76 0.221916
Target:  5'- gCAGGGucCGcAGGCGGUG-CCGcCGCCCa -3'
miRNA:   3'- aGUUCCu-GU-UCCGCCACuGGU-GCGGG- -5'
19210 3' -56.2 NC_004684.1 + 26941 0.75 0.252659
Target:  5'- -gAAGGuaucgucccgauugcCAAGGCGGUGGCCaACGCCg -3'
miRNA:   3'- agUUCCu--------------GUUCCGCCACUGG-UGCGGg -5'
19210 3' -56.2 NC_004684.1 + 8711 0.75 0.261037
Target:  5'- aCGAGGACuccauGGCGGcgcUGaucccgauguucgccGCCGCGCCCg -3'
miRNA:   3'- aGUUCCUGuu---CCGCC---AC---------------UGGUGCGGG- -5'
19210 3' -56.2 NC_004684.1 + 42671 0.75 0.264979
Target:  5'- -gGAGGGCAucacGGCGGUGGCCAaccaGUUCa -3'
miRNA:   3'- agUUCCUGUu---CCGCCACUGGUg---CGGG- -5'
19210 3' -56.2 NC_004684.1 + 29401 0.75 0.270982
Target:  5'- cCGAGGACAAGGCcaucaacGUcGACCccaucguGCGCCCg -3'
miRNA:   3'- aGUUCCUGUUCCGc------CA-CUGG-------UGCGGG- -5'
19210 3' -56.2 NC_004684.1 + 29563 0.74 0.285416
Target:  5'- -uGGGGccgcugccuuACAAGGCGGUGGCCGCaCUCg -3'
miRNA:   3'- agUUCC----------UGUUCCGCCACUGGUGcGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.