miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19210 3' -56.2 NC_004684.1 + 433 0.66 0.734602
Target:  5'- cCGAGGuCGAcGGCuGGggcgaGAUCGCGCCg -3'
miRNA:   3'- aGUUCCuGUU-CCG-CCa----CUGGUGCGGg -5'
19210 3' -56.2 NC_004684.1 + 569 0.69 0.575084
Target:  5'- -gGAGGACAAGGCcGaGGCCAcCGUCg -3'
miRNA:   3'- agUUCCUGUUCCGcCaCUGGU-GCGGg -5'
19210 3' -56.2 NC_004684.1 + 616 0.7 0.482108
Target:  5'- aCAAGGGC--GGCGaGU-ACCGCGCCg -3'
miRNA:   3'- aGUUCCUGuuCCGC-CAcUGGUGCGGg -5'
19210 3' -56.2 NC_004684.1 + 724 0.68 0.607123
Target:  5'- aCcuGGGCAccGcCGGUGACCGgGCCg -3'
miRNA:   3'- aGuuCCUGUucC-GCCACUGGUgCGGg -5'
19210 3' -56.2 NC_004684.1 + 1083 0.66 0.72427
Target:  5'- ---uGGACGugauCGGUGACCAgGCCg -3'
miRNA:   3'- aguuCCUGUucc-GCCACUGGUgCGGg -5'
19210 3' -56.2 NC_004684.1 + 1186 0.67 0.692792
Target:  5'- aUCGAGaGCAAGGagaGcUGACCAUGgCCa -3'
miRNA:   3'- -AGUUCcUGUUCCg--CcACUGGUGCgGG- -5'
19210 3' -56.2 NC_004684.1 + 1933 0.68 0.596412
Target:  5'- ---cGGGCcuGGUaccggcgcacGGUGGCCGCGCgCCg -3'
miRNA:   3'- aguuCCUGuuCCG----------CCACUGGUGCG-GG- -5'
19210 3' -56.2 NC_004684.1 + 2212 0.67 0.66081
Target:  5'- cCGAGGACAAcaUGGUccaGACCGuggUGCCCa -3'
miRNA:   3'- aGUUCCUGUUccGCCA---CUGGU---GCGGG- -5'
19210 3' -56.2 NC_004684.1 + 2619 0.69 0.575084
Target:  5'- uUCu-GGAagcAGGCGGUGGCCAaCGCa- -3'
miRNA:   3'- -AGuuCCUgu-UCCGCCACUGGU-GCGgg -5'
19210 3' -56.2 NC_004684.1 + 3047 0.71 0.415091
Target:  5'- aCGAGGcCcGGGUGGUGG-CGCGCCg -3'
miRNA:   3'- aGUUCCuGuUCCGCCACUgGUGCGGg -5'
19210 3' -56.2 NC_004684.1 + 3777 0.66 0.702301
Target:  5'- aCAGGcGAagcugauggcgucCGAGGCGGUaACCACcGCCg -3'
miRNA:   3'- aGUUC-CU-------------GUUCCGCCAcUGGUG-CGGg -5'
19210 3' -56.2 NC_004684.1 + 3941 0.66 0.754962
Target:  5'- ---cGGAacuGGGCGGcgaaggcGACCACGCUg -3'
miRNA:   3'- aguuCCUgu-UCCGCCa------CUGGUGCGGg -5'
19210 3' -56.2 NC_004684.1 + 4143 0.66 0.71385
Target:  5'- gUCGuGGACAAGcuGCucgGGCCgACGCCCg -3'
miRNA:   3'- -AGUuCCUGUUC--CGccaCUGG-UGCGGG- -5'
19210 3' -56.2 NC_004684.1 + 4996 0.73 0.354103
Target:  5'- gCGAGGGCAAGGgccCGGUG-CCGCuCCUg -3'
miRNA:   3'- aGUUCCUGUUCC---GCCACuGGUGcGGG- -5'
19210 3' -56.2 NC_004684.1 + 5848 0.66 0.72427
Target:  5'- uUCGAGGACcAGGCGuGcGACuggCAgGCCg -3'
miRNA:   3'- -AGUUCCUGuUCCGC-CaCUG---GUgCGGg -5'
19210 3' -56.2 NC_004684.1 + 5939 0.67 0.670441
Target:  5'- ---uGGcCAccGGGCGGUccaaccuGGCCGCGCCg -3'
miRNA:   3'- aguuCCuGU--UCCGCCA-------CUGGUGCGGg -5'
19210 3' -56.2 NC_004684.1 + 6075 0.67 0.66081
Target:  5'- cCGAGGGCGGcggcccggcGGCGGUGcuGCCGgaaauCGaCCCg -3'
miRNA:   3'- aGUUCCUGUU---------CCGCCAC--UGGU-----GC-GGG- -5'
19210 3' -56.2 NC_004684.1 + 7054 0.66 0.703354
Target:  5'- ---uGGcCGAacGcGCGGUGAUCGCGCUCg -3'
miRNA:   3'- aguuCCuGUU--C-CGCCACUGGUGCGGG- -5'
19210 3' -56.2 NC_004684.1 + 7137 0.68 0.58573
Target:  5'- cCGAGGuACAcccGGaaGGUGGCCAcCGCCUg -3'
miRNA:   3'- aGUUCC-UGU---UCcgCCACUGGU-GCGGG- -5'
19210 3' -56.2 NC_004684.1 + 7592 0.68 0.596412
Target:  5'- -uGAGcGACAugcuGGCGGUGuucgccuCCugGCCg -3'
miRNA:   3'- agUUC-CUGUu---CCGCCACu------GGugCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.