miRNA display CGI


Results 41 - 60 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19216 3' -53.4 NC_004684.1 + 50656 0.67 0.824075
Target:  5'- --cGUCGGGGGUgcgGACCAGGCGugcgcCCGGUg -3'
miRNA:   3'- gacUAGUUUCCG---CUGGUCUGC-----GGUCG- -5'
19216 3' -53.4 NC_004684.1 + 47979 0.67 0.824075
Target:  5'- -aGAggcCGAAcuGGCGACCGGugaACGCCcacAGCa -3'
miRNA:   3'- gaCUa--GUUU--CCGCUGGUC---UGCGG---UCG- -5'
19216 3' -53.4 NC_004684.1 + 26989 0.67 0.824075
Target:  5'- aUGAUCGAGuGGCuGACCGGcCuGCCgaaGGCc -3'
miRNA:   3'- gACUAGUUU-CCG-CUGGUCuG-CGG---UCG- -5'
19216 3' -53.4 NC_004684.1 + 57062 0.67 0.824075
Target:  5'- -gGGUCGAuGGCGGCCu-GCGUugCGGCg -3'
miRNA:   3'- gaCUAGUUuCCGCUGGucUGCG--GUCG- -5'
19216 3' -53.4 NC_004684.1 + 63220 0.67 0.823159
Target:  5'- -cGGcCAccGGCGgcucguuGCCGGGCGUCGGCc -3'
miRNA:   3'- gaCUaGUuuCCGC-------UGGUCUGCGGUCG- -5'
19216 3' -53.4 NC_004684.1 + 27497 0.67 0.814819
Target:  5'- -cGAUUacaguGAAcGGCgGGCCAGAgGCUGGCa -3'
miRNA:   3'- gaCUAG-----UUU-CCG-CUGGUCUgCGGUCG- -5'
19216 3' -53.4 NC_004684.1 + 3945 0.67 0.814819
Target:  5'- aCUGGgcggCGAAGGCGACC--ACGCUg-- -3'
miRNA:   3'- -GACUa---GUUUCCGCUGGucUGCGGucg -5'
19216 3' -53.4 NC_004684.1 + 11733 0.67 0.814819
Target:  5'- uUGGUCcggguAGGCGA--GGACGCCuauGGCa -3'
miRNA:   3'- gACUAGuu---UCCGCUggUCUGCGG---UCG- -5'
19216 3' -53.4 NC_004684.1 + 6014 0.67 0.814819
Target:  5'- --cAUCGGAcgcGGUGGCCuuuAGGcCGCCAGCg -3'
miRNA:   3'- gacUAGUUU---CCGCUGG---UCU-GCGGUCG- -5'
19216 3' -53.4 NC_004684.1 + 18006 0.67 0.805371
Target:  5'- -aGGUCGAuGGCGACUAcGGCGU-GGCg -3'
miRNA:   3'- gaCUAGUUuCCGCUGGU-CUGCGgUCG- -5'
19216 3' -53.4 NC_004684.1 + 59204 0.67 0.805371
Target:  5'- uUGAUCAGcuGCG-CCuGGC-CCAGCg -3'
miRNA:   3'- gACUAGUUucCGCuGGuCUGcGGUCG- -5'
19216 3' -53.4 NC_004684.1 + 63968 0.67 0.805371
Target:  5'- gCUGA-CuguGGCGGCCAGcggUGCCAGg -3'
miRNA:   3'- -GACUaGuuuCCGCUGGUCu--GCGGUCg -5'
19216 3' -53.4 NC_004684.1 + 59592 0.67 0.805371
Target:  5'- -cGGUCGAAGGUGuuaCAGcucgucauCGUCAGCg -3'
miRNA:   3'- gaCUAGUUUCCGCug-GUCu-------GCGGUCG- -5'
19216 3' -53.4 NC_004684.1 + 22955 0.67 0.805371
Target:  5'- gCUGGUCGAcuacGCcaccgGGCCGGACGCCAa- -3'
miRNA:   3'- -GACUAGUUuc--CG-----CUGGUCUGCGGUcg -5'
19216 3' -53.4 NC_004684.1 + 16351 0.67 0.804416
Target:  5'- --cGUCAccGGCGguggccgcauccuGCCGGugGaCCAGCa -3'
miRNA:   3'- gacUAGUuuCCGC-------------UGGUCugC-GGUCG- -5'
19216 3' -53.4 NC_004684.1 + 61434 0.67 0.8025
Target:  5'- -cGGUCGcucaccGGcGCGGCCagguuggaccgcccGGugGCCAGCg -3'
miRNA:   3'- gaCUAGUu-----UC-CGCUGG--------------UCugCGGUCG- -5'
19216 3' -53.4 NC_004684.1 + 59872 0.67 0.798648
Target:  5'- uUGAUCAGugggucacgcgcgcGGCGGCCAGcGCGuagacaaCCAGCc -3'
miRNA:   3'- gACUAGUUu-------------CCGCUGGUC-UGC-------GGUCG- -5'
19216 3' -53.4 NC_004684.1 + 54187 0.67 0.79574
Target:  5'- aUGAUCAGcAGGCGcaaACCGG-CgGCCuGCu -3'
miRNA:   3'- gACUAGUU-UCCGC---UGGUCuG-CGGuCG- -5'
19216 3' -53.4 NC_004684.1 + 64753 0.67 0.79574
Target:  5'- gCUGGcCGAGcuGGUG-CCAGGCGUCGGUc -3'
miRNA:   3'- -GACUaGUUU--CCGCuGGUCUGCGGUCG- -5'
19216 3' -53.4 NC_004684.1 + 2758 0.67 0.79574
Target:  5'- --cGUCGAguggacguuccAGGUGuccaGCCuGGACGCCAGCg -3'
miRNA:   3'- gacUAGUU-----------UCCGC----UGG-UCUGCGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.