miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19226 5' -57.5 NC_004684.1 + 46861 0.66 0.641794
Target:  5'- uGCCUGGCCCacccagGCgaugacgCCGCCUUc-- -3'
miRNA:   3'- -CGGACCGGGa-----CGagua---GGUGGAGaag -5'
19226 5' -57.5 NC_004684.1 + 32963 0.66 0.641794
Target:  5'- cGCgCUGGCCaacCUCG-CCGCCUCg-- -3'
miRNA:   3'- -CG-GACCGGgacGAGUaGGUGGAGaag -5'
19226 5' -57.5 NC_004684.1 + 42779 0.66 0.630972
Target:  5'- gGCCUGGCCgcccaUGCgcgccaCGUCCGCUg--UCg -3'
miRNA:   3'- -CGGACCGGg----ACGa-----GUAGGUGGagaAG- -5'
19226 5' -57.5 NC_004684.1 + 48944 0.66 0.62015
Target:  5'- uGCCgucGUCCUGCUCGggagCCACgUCg-- -3'
miRNA:   3'- -CGGac-CGGGACGAGUa---GGUGgAGaag -5'
19226 5' -57.5 NC_004684.1 + 57132 0.66 0.609339
Target:  5'- aGCaCUGGCgCgGCUgGUUCGCCUCc-- -3'
miRNA:   3'- -CG-GACCGgGaCGAgUAGGUGGAGaag -5'
19226 5' -57.5 NC_004684.1 + 45224 0.66 0.598547
Target:  5'- cGCCgUGGCCCUGCg-GUgCuCCUCg-- -3'
miRNA:   3'- -CGG-ACCGGGACGagUAgGuGGAGaag -5'
19226 5' -57.5 NC_004684.1 + 40657 0.66 0.587783
Target:  5'- gGCCUGGCCCcGC-CAgUCGCgCUCg-- -3'
miRNA:   3'- -CGGACCGGGaCGaGUaGGUG-GAGaag -5'
19226 5' -57.5 NC_004684.1 + 5118 0.67 0.545163
Target:  5'- cGCCUGGaCCUGCUgAaggCCACCg---- -3'
miRNA:   3'- -CGGACCgGGACGAgUa--GGUGGagaag -5'
19226 5' -57.5 NC_004684.1 + 50623 0.68 0.524218
Target:  5'- aCCUGGuCCCcGCUCAUCC-CCg---- -3'
miRNA:   3'- cGGACC-GGGaCGAGUAGGuGGagaag -5'
19226 5' -57.5 NC_004684.1 + 62534 0.68 0.513861
Target:  5'- aGCCUGGUCgCUggccagcaGCUCGUCCAgCUUg-- -3'
miRNA:   3'- -CGGACCGG-GA--------CGAGUAGGUgGAGaag -5'
19226 5' -57.5 NC_004684.1 + 21914 0.68 0.494419
Target:  5'- aGCCUGGCCCgGUgaccaccgccgggagCAUCaACCUCggCg -3'
miRNA:   3'- -CGGACCGGGaCGa--------------GUAGgUGGAGaaG- -5'
19226 5' -57.5 NC_004684.1 + 41529 0.68 0.493406
Target:  5'- cCCUGGCaCCgcaGCUCAUCuCugC-CUUCc -3'
miRNA:   3'- cGGACCG-GGa--CGAGUAG-GugGaGAAG- -5'
19226 5' -57.5 NC_004684.1 + 17464 0.68 0.483318
Target:  5'- aCCguacGcGCCCUGCUCAUCgACCUg--- -3'
miRNA:   3'- cGGa---C-CGGGACGAGUAGgUGGAgaag -5'
19226 5' -57.5 NC_004684.1 + 51017 0.68 0.473331
Target:  5'- aGCU--GCCCUGCUgGUCCACCg---- -3'
miRNA:   3'- -CGGacCGGGACGAgUAGGUGGagaag -5'
19226 5' -57.5 NC_004684.1 + 38407 0.69 0.453676
Target:  5'- gGCCUcccGGUCgCgcagGCUCAgcUCCACCUCgaagUCg -3'
miRNA:   3'- -CGGA---CCGG-Ga---CGAGU--AGGUGGAGa---AG- -5'
19226 5' -57.5 NC_004684.1 + 64552 0.69 0.428804
Target:  5'- cCCgUGGUCCaggUGCUCAUCCACCcacccgcgcaggagCUUCu -3'
miRNA:   3'- cGG-ACCGGG---ACGAGUAGGUGGa-------------GAAG- -5'
19226 5' -57.5 NC_004684.1 + 37693 0.69 0.42505
Target:  5'- aCCUGGgCCUGUUCGUacgcaaCCACCUUg-- -3'
miRNA:   3'- cGGACCgGGACGAGUA------GGUGGAGaag -5'
19226 5' -57.5 NC_004684.1 + 31744 0.69 0.415749
Target:  5'- cGCCgacGGCCCUGUaCGUCgGCCUgUa- -3'
miRNA:   3'- -CGGa--CCGGGACGaGUAGgUGGAgAag -5'
19226 5' -57.5 NC_004684.1 + 11958 0.71 0.354285
Target:  5'- aGCCUGGCaCCUGCggcgCCACCg---- -3'
miRNA:   3'- -CGGACCG-GGACGaguaGGUGGagaag -5'
19226 5' -57.5 NC_004684.1 + 41907 0.72 0.278132
Target:  5'- cGCCUGGCCCUGgUgAugagcUCCACCaggUCg -3'
miRNA:   3'- -CGGACCGGGACgAgU-----AGGUGGagaAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.