miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19238 5' -55.7 NC_004684.1 + 54915 1.11 0.000773
Target:  5'- cUGGUGGCCGAGCGUCGCAAAGAGUGCu -3'
miRNA:   3'- -ACCACCGGCUCGCAGCGUUUCUCACG- -5'
19238 5' -55.7 NC_004684.1 + 55573 0.77 0.205433
Target:  5'- cGGUGGCCGGGgGUCcagGCAccAAGgcGGUGCu -3'
miRNA:   3'- aCCACCGGCUCgCAG---CGU--UUC--UCACG- -5'
19238 5' -55.7 NC_004684.1 + 48969 0.75 0.246264
Target:  5'- gGGUGGCCgGGGCGggCGCGucG-GUGCc -3'
miRNA:   3'- aCCACCGG-CUCGCa-GCGUuuCuCACG- -5'
19238 5' -55.7 NC_004684.1 + 40746 0.75 0.259106
Target:  5'- cGGUGGCgGuGGUGUUGaAGGGAGUGCu -3'
miRNA:   3'- aCCACCGgC-UCGCAGCgUUUCUCACG- -5'
19238 5' -55.7 NC_004684.1 + 35640 0.75 0.27249
Target:  5'- gUGGUGGCCGAGUcguuccuggaGUCGaCAAAGGacgGCg -3'
miRNA:   3'- -ACCACCGGCUCG----------CAGC-GUUUCUca-CG- -5'
19238 5' -55.7 NC_004684.1 + 35169 0.73 0.339582
Target:  5'- cGGUGGCCGAGCcggaaccggGUgUGCAGuggaacuGGGUGCc -3'
miRNA:   3'- aCCACCGGCUCG---------CA-GCGUUu------CUCACG- -5'
19238 5' -55.7 NC_004684.1 + 46290 0.73 0.339582
Target:  5'- cGGcGGCCGAGCGcguugcggCGCuuGGcGUGCg -3'
miRNA:   3'- aCCaCCGGCUCGCa-------GCGuuUCuCACG- -5'
19238 5' -55.7 NC_004684.1 + 57579 0.73 0.364459
Target:  5'- cGGUGGCCuuGAGCGUCG-----GGUGCc -3'
miRNA:   3'- aCCACCGG--CUCGCAGCguuucUCACG- -5'
19238 5' -55.7 NC_004684.1 + 34437 0.72 0.408642
Target:  5'- aGGuUGGCC-AGCGcgagCGCcuGGAGUGCc -3'
miRNA:   3'- aCC-ACCGGcUCGCa---GCGuuUCUCACG- -5'
19238 5' -55.7 NC_004684.1 + 55803 0.71 0.427227
Target:  5'- gGGUGGUCcgguGAGCGcgUGCGAgcacGGGGUGCc -3'
miRNA:   3'- aCCACCGG----CUCGCa-GCGUU----UCUCACG- -5'
19238 5' -55.7 NC_004684.1 + 6309 0.71 0.427227
Target:  5'- cGGUGGC--GGCGUUGCGGAGAcaaUGCc -3'
miRNA:   3'- aCCACCGgcUCGCAGCGUUUCUc--ACG- -5'
19238 5' -55.7 NC_004684.1 + 5604 0.7 0.475783
Target:  5'- cGG-GGCCGAGCuGgcgCGCAu--GGUGCu -3'
miRNA:   3'- aCCaCCGGCUCG-Ca--GCGUuucUCACG- -5'
19238 5' -55.7 NC_004684.1 + 16866 0.7 0.485824
Target:  5'- cUGGUGGCC-AGUGUCuGCGccGguguGGUGCa -3'
miRNA:   3'- -ACCACCGGcUCGCAG-CGUuuC----UCACG- -5'
19238 5' -55.7 NC_004684.1 + 57165 0.7 0.526932
Target:  5'- cGGUGGCCGAcGCGcaCGCuc-GGGcGCa -3'
miRNA:   3'- aCCACCGGCU-CGCa-GCGuuuCUCaCG- -5'
19238 5' -55.7 NC_004684.1 + 42211 0.69 0.537417
Target:  5'- cUGGUGGCCGAcguggccgccgGUGUCggcaccggcGCGAAGAcGUGg -3'
miRNA:   3'- -ACCACCGGCU-----------CGCAG---------CGUUUCU-CACg -5'
19238 5' -55.7 NC_004684.1 + 47036 0.69 0.547973
Target:  5'- gGGUGGCCu-GCG-CGguGAcGGUGCa -3'
miRNA:   3'- aCCACCGGcuCGCaGCguUUcUCACG- -5'
19238 5' -55.7 NC_004684.1 + 64865 0.69 0.552214
Target:  5'- aGGUGcgcagcguccgcaguGCCGGGCGUCGUu--GAG-GCc -3'
miRNA:   3'- aCCAC---------------CGGCUCGCAGCGuuuCUCaCG- -5'
19238 5' -55.7 NC_004684.1 + 46116 0.69 0.558594
Target:  5'- ---cGGCCGGGCG-CGCGugccGGGGUGg -3'
miRNA:   3'- accaCCGGCUCGCaGCGUu---UCUCACg -5'
19238 5' -55.7 NC_004684.1 + 11370 0.69 0.569272
Target:  5'- gUGGUGGCCaGcAGCGUgGU----GGUGCg -3'
miRNA:   3'- -ACCACCGG-C-UCGCAgCGuuucUCACG- -5'
19238 5' -55.7 NC_004684.1 + 1952 0.69 0.569272
Target:  5'- cGGUGGCCGcGCGcCGCAcgccAGcGCa -3'
miRNA:   3'- aCCACCGGCuCGCaGCGUuuc-UCaCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.