miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19238 5' -55.7 NC_004684.1 + 1689 0.68 0.634101
Target:  5'- ---aGGCCGAGCuGgcgCGCAucGAGcGCa -3'
miRNA:   3'- accaCCGGCUCG-Ca--GCGUuuCUCaCG- -5'
19238 5' -55.7 NC_004684.1 + 1952 0.69 0.569272
Target:  5'- cGGUGGCCGcGCGcCGCAcgccAGcGCa -3'
miRNA:   3'- aCCACCGGCuCGCaGCGUuuc-UCaCG- -5'
19238 5' -55.7 NC_004684.1 + 3854 0.68 0.612402
Target:  5'- aGGaGGCCGAGCGccaCGCccgcGAGcUGCg -3'
miRNA:   3'- aCCaCCGGCUCGCa--GCGuuu-CUC-ACG- -5'
19238 5' -55.7 NC_004684.1 + 4186 0.66 0.760286
Target:  5'- cGGUGGCCGAGaagauggggcCGUucggcCGCGucGAGUcgacccgGCg -3'
miRNA:   3'- aCCACCGGCUC----------GCA-----GCGUuuCUCA-------CG- -5'
19238 5' -55.7 NC_004684.1 + 5250 0.66 0.730498
Target:  5'- ---aGGCCGGGCacgGCGAGGcGUGCa -3'
miRNA:   3'- accaCCGGCUCGcagCGUUUCuCACG- -5'
19238 5' -55.7 NC_004684.1 + 5604 0.7 0.475783
Target:  5'- cGG-GGCCGAGCuGgcgCGCAu--GGUGCu -3'
miRNA:   3'- aCCaCCGGCUCG-Ca--GCGUuucUCACG- -5'
19238 5' -55.7 NC_004684.1 + 6309 0.71 0.427227
Target:  5'- cGGUGGC--GGCGUUGCGGAGAcaaUGCc -3'
miRNA:   3'- aCCACCGgcUCGCAGCGUUUCUc--ACG- -5'
19238 5' -55.7 NC_004684.1 + 6488 0.68 0.589691
Target:  5'- -cGUGGCCGAGaugGUCGaugaacuggaggcCGAGGAGgUGCg -3'
miRNA:   3'- acCACCGGCUCg--CAGC-------------GUUUCUC-ACG- -5'
19238 5' -55.7 NC_004684.1 + 7319 0.68 0.601573
Target:  5'- cGGccaUGGCCGAcGCGU-GCucGGuGUGCa -3'
miRNA:   3'- aCC---ACCGGCU-CGCAgCGuuUCuCACG- -5'
19238 5' -55.7 NC_004684.1 + 8069 0.67 0.666612
Target:  5'- -cGUGGCCGAGUGgccaauCGAGGAGcGCc -3'
miRNA:   3'- acCACCGGCUCGCagc---GUUUCUCaCG- -5'
19238 5' -55.7 NC_004684.1 + 11370 0.69 0.569272
Target:  5'- gUGGUGGCCaGcAGCGUgGU----GGUGCg -3'
miRNA:   3'- -ACCACCGG-C-UCGCAgCGuuucUCACG- -5'
19238 5' -55.7 NC_004684.1 + 16514 0.68 0.612402
Target:  5'- aGGU-GCCGuauGCGcCGCAGuccuGGGGUGUg -3'
miRNA:   3'- aCCAcCGGCu--CGCaGCGUU----UCUCACG- -5'
19238 5' -55.7 NC_004684.1 + 16866 0.7 0.485824
Target:  5'- cUGGUGGCC-AGUGUCuGCGccGguguGGUGCa -3'
miRNA:   3'- -ACCACCGGcUCGCAG-CGUuuC----UCACG- -5'
19238 5' -55.7 NC_004684.1 + 24932 0.66 0.740874
Target:  5'- aGGUGGCCaggaacgacaGAGCGgCGCGAuGAccGCc -3'
miRNA:   3'- aCCACCGG----------CUCGCaGCGUUuCUcaCG- -5'
19238 5' -55.7 NC_004684.1 + 27715 0.68 0.612402
Target:  5'- cGGcGGCCGAGCGcgaGCAc-GAG-GCa -3'
miRNA:   3'- aCCaCCGGCUCGCag-CGUuuCUCaCG- -5'
19238 5' -55.7 NC_004684.1 + 27804 0.66 0.720026
Target:  5'- gUGGUGGcCCGAGCa--GCuguuGAGGGcgGCc -3'
miRNA:   3'- -ACCACC-GGCUCGcagCGu---UUCUCa-CG- -5'
19238 5' -55.7 NC_004684.1 + 27842 0.66 0.720026
Target:  5'- cUGGgcaCCGAGCGcgcugUGCAcgcAGGAGUGCc -3'
miRNA:   3'- -ACCaccGGCUCGCa----GCGU---UUCUCACG- -5'
19238 5' -55.7 NC_004684.1 + 28076 0.68 0.644953
Target:  5'- gGuGUGGCCGGGcCGcCGCGcgacccgcaccGGGuGGUGCg -3'
miRNA:   3'- aC-CACCGGCUC-GCaGCGU-----------UUC-UCACG- -5'
19238 5' -55.7 NC_004684.1 + 34437 0.72 0.408642
Target:  5'- aGGuUGGCC-AGCGcgagCGCcuGGAGUGCc -3'
miRNA:   3'- aCC-ACCGGcUCGCa---GCGuuUCUCACG- -5'
19238 5' -55.7 NC_004684.1 + 35169 0.73 0.339582
Target:  5'- cGGUGGCCGAGCcggaaccggGUgUGCAGuggaacuGGGUGCc -3'
miRNA:   3'- aCCACCGGCUCG---------CA-GCGUUu------CUCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.