miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19240 5' -55.1 NC_004684.1 + 450 0.71 0.480833
Target:  5'- gGCGagaucGCGCCGGa--GGCCUUCgCCGAGg -3'
miRNA:   3'- -CGU-----UGCGGCCcuaCUGGAAGaGGCUC- -5'
19240 5' -55.1 NC_004684.1 + 729 0.68 0.66021
Target:  5'- gGCAcCGCCGGuGAccgGGCCgccgCCGAGg -3'
miRNA:   3'- -CGUuGCGGCC-CUa--CUGGaagaGGCUC- -5'
19240 5' -55.1 NC_004684.1 + 2556 0.66 0.784529
Target:  5'- -gAGCGCgCGGa--GGCCUUCgCCGAGg -3'
miRNA:   3'- cgUUGCG-GCCcuaCUGGAAGaGGCUC- -5'
19240 5' -55.1 NC_004684.1 + 2682 0.67 0.751744
Target:  5'- uCAGCGCCGGGcAccgcauccccggccUGGCCggugCCGGGg -3'
miRNA:   3'- cGUUGCGGCCC-U--------------ACUGGaagaGGCUC- -5'
19240 5' -55.1 NC_004684.1 + 4513 0.77 0.232031
Target:  5'- gGCAugGCCGGGAU--CCUgUUCCGGGg -3'
miRNA:   3'- -CGUugCGGCCCUAcuGGAaGAGGCUC- -5'
19240 5' -55.1 NC_004684.1 + 5961 0.67 0.734332
Target:  5'- gGCcGCGCCGGuGAgcGACCgg--CCGAGc -3'
miRNA:   3'- -CGuUGCGGCC-CUa-CUGGaagaGGCUC- -5'
19240 5' -55.1 NC_004684.1 + 6855 0.67 0.713487
Target:  5'- gGCGACGCCGuGGUgGugCUgcacuggCUCUGGGg -3'
miRNA:   3'- -CGUUGCGGCcCUA-CugGAa------GAGGCUC- -5'
19240 5' -55.1 NC_004684.1 + 9574 0.66 0.784529
Target:  5'- aGCAcCGCCGGGAccaGGCCguggUCGGGu -3'
miRNA:   3'- -CGUuGCGGCCCUa--CUGGaagaGGCUC- -5'
19240 5' -55.1 NC_004684.1 + 9937 0.72 0.422891
Target:  5'- -uGugGCCGGGcUGACCaugCUCUGGGu -3'
miRNA:   3'- cgUugCGGCCCuACUGGaa-GAGGCUC- -5'
19240 5' -55.1 NC_004684.1 + 12202 0.66 0.764833
Target:  5'- cCAGCGCCGccgccagcGGUG-CgUUCUCCGGGg -3'
miRNA:   3'- cGUUGCGGCc-------CUACuGgAAGAGGCUC- -5'
19240 5' -55.1 NC_004684.1 + 13832 0.66 0.764833
Target:  5'- gGCGuuGCGCCGucGUGG--UUCUCCGAGg -3'
miRNA:   3'- -CGU--UGCGGCccUACUggAAGAGGCUC- -5'
19240 5' -55.1 NC_004684.1 + 14146 0.66 0.812907
Target:  5'- aGC-GCGCCGGGAUcACCUaC-CCGuGc -3'
miRNA:   3'- -CGuUGCGGCCCUAcUGGAaGaGGCuC- -5'
19240 5' -55.1 NC_004684.1 + 19003 0.75 0.29379
Target:  5'- cCAACGCCGGGGUGcugaucgugcaccacACCggcaagcaCUCCGAGa -3'
miRNA:   3'- cGUUGCGGCCCUAC---------------UGGaa------GAGGCUC- -5'
19240 5' -55.1 NC_004684.1 + 19546 0.78 0.1986
Target:  5'- gGguGCGCCGGGcgGugCcaggUCUCCGGGc -3'
miRNA:   3'- -CguUGCGGCCCuaCugGa---AGAGGCUC- -5'
19240 5' -55.1 NC_004684.1 + 27116 0.75 0.316032
Target:  5'- aCGGCGCggucaaCGGGGUGGCCUUCUacaaggucgaccgccCCGAGa -3'
miRNA:   3'- cGUUGCG------GCCCUACUGGAAGA---------------GGCUC- -5'
19240 5' -55.1 NC_004684.1 + 27425 0.7 0.584816
Target:  5'- cGgAGCGCagGGGAUGGCg--CUCCGGGc -3'
miRNA:   3'- -CgUUGCGg-CCCUACUGgaaGAGGCUC- -5'
19240 5' -55.1 NC_004684.1 + 31578 0.66 0.812907
Target:  5'- gGCGGCGUCGuGaAUGACCaccgUCgCCGGGg -3'
miRNA:   3'- -CGUUGCGGC-CcUACUGGa---AGaGGCUC- -5'
19240 5' -55.1 NC_004684.1 + 32548 0.69 0.617071
Target:  5'- --cGCGCCGGGcgAUGACCUggagaUUCGGGc -3'
miRNA:   3'- cguUGCGGCCC--UACUGGAag---AGGCUC- -5'
19240 5' -55.1 NC_004684.1 + 36998 0.69 0.617071
Target:  5'- gGCAGCGCCGGGAUGcGCgUggggUCCa-- -3'
miRNA:   3'- -CGUUGCGGCCCUAC-UGgAag--AGGcuc -5'
19240 5' -55.1 NC_004684.1 + 38427 0.66 0.794154
Target:  5'- cCGAUGCgGGGGUGACCacgUCcaagguugCCGAc -3'
miRNA:   3'- cGUUGCGgCCCUACUGGa--AGa-------GGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.