miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19240 5' -55.1 NC_004684.1 + 56249 1.11 0.001001
Target:  5'- cGCAACGCCGGGAUGACCUUCUCCGAGa -3'
miRNA:   3'- -CGUUGCGGCCCUACUGGAAGAGGCUC- -5'
19240 5' -55.1 NC_004684.1 + 63010 0.67 0.744612
Target:  5'- cGCGAUGCgCaGGAUGACCgcg-CCGGa -3'
miRNA:   3'- -CGUUGCG-GcCCUACUGGaagaGGCUc -5'
19240 5' -55.1 NC_004684.1 + 2682 0.67 0.751744
Target:  5'- uCAGCGCCGGGcAccgcauccccggccUGGCCggugCCGGGg -3'
miRNA:   3'- cGUUGCGGCCC-U--------------ACUGGaagaGGCUC- -5'
19240 5' -55.1 NC_004684.1 + 13832 0.66 0.764833
Target:  5'- gGCGuuGCGCCGucGUGG--UUCUCCGAGg -3'
miRNA:   3'- -CGU--UGCGGCccUACUggAAGAGGCUC- -5'
19240 5' -55.1 NC_004684.1 + 2556 0.66 0.784529
Target:  5'- -gAGCGCgCGGa--GGCCUUCgCCGAGg -3'
miRNA:   3'- cgUUGCG-GCCcuaCUGGAAGaGGCUC- -5'
19240 5' -55.1 NC_004684.1 + 55878 0.66 0.784529
Target:  5'- -gGugGCCGGGGcaugGACCUgC-CCGAu -3'
miRNA:   3'- cgUugCGGCCCUa---CUGGAaGaGGCUc -5'
19240 5' -55.1 NC_004684.1 + 60741 0.66 0.794154
Target:  5'- cCGGCGaCCGGG-UGGCCg---CCGGGu -3'
miRNA:   3'- cGUUGC-GGCCCuACUGGaagaGGCUC- -5'
19240 5' -55.1 NC_004684.1 + 38427 0.66 0.794154
Target:  5'- cCGAUGCgGGGGUGACCacgUCcaagguugCCGAc -3'
miRNA:   3'- cGUUGCGgCCCUACUGGa--AGa-------GGCUc -5'
19240 5' -55.1 NC_004684.1 + 61709 0.66 0.812907
Target:  5'- gGCAG-GCCGGGccccGGCCacCUCCGAc -3'
miRNA:   3'- -CGUUgCGGCCCua--CUGGaaGAGGCUc -5'
19240 5' -55.1 NC_004684.1 + 5961 0.67 0.734332
Target:  5'- gGCcGCGCCGGuGAgcGACCgg--CCGAGc -3'
miRNA:   3'- -CGuUGCGGCC-CUa-CUGGaagaGGCUC- -5'
19240 5' -55.1 NC_004684.1 + 58321 0.67 0.723954
Target:  5'- gGCGACGCCGGGucAUGGCgcgC-CCGGu -3'
miRNA:   3'- -CGUUGCGGCCC--UACUGgaaGaGGCUc -5'
19240 5' -55.1 NC_004684.1 + 6855 0.67 0.713487
Target:  5'- gGCGACGCCGuGGUgGugCUgcacuggCUCUGGGg -3'
miRNA:   3'- -CGUUGCGGCcCUA-CugGAa------GAGGCUC- -5'
19240 5' -55.1 NC_004684.1 + 19546 0.78 0.1986
Target:  5'- gGguGCGCCGGGcgGugCcaggUCUCCGGGc -3'
miRNA:   3'- -CguUGCGGCCCuaCugGa---AGAGGCUC- -5'
19240 5' -55.1 NC_004684.1 + 48657 0.75 0.312994
Target:  5'- uGCAccGCGCCGGaGA-GGCCUUCaCCGGGc -3'
miRNA:   3'- -CGU--UGCGGCC-CUaCUGGAAGaGGCUC- -5'
19240 5' -55.1 NC_004684.1 + 9937 0.72 0.422891
Target:  5'- -uGugGCCGGGcUGACCaugCUCUGGGu -3'
miRNA:   3'- cgUugCGGCCCuACUGGaa-GAGGCUC- -5'
19240 5' -55.1 NC_004684.1 + 58538 0.71 0.521526
Target:  5'- gGCGGCGuuGGaGAUGcgagcgGCCUUCUCCu-- -3'
miRNA:   3'- -CGUUGCggCC-CUAC------UGGAAGAGGcuc -5'
19240 5' -55.1 NC_004684.1 + 32548 0.69 0.617071
Target:  5'- --cGCGCCGGGcgAUGACCUggagaUUCGGGc -3'
miRNA:   3'- cguUGCGGCCC--UACUGGAag---AGGCUC- -5'
19240 5' -55.1 NC_004684.1 + 64482 0.68 0.681668
Target:  5'- aGCAG-GCCGGuGGUGGCCUcgUUCUGGa -3'
miRNA:   3'- -CGUUgCGGCC-CUACUGGAa-GAGGCUc -5'
19240 5' -55.1 NC_004684.1 + 66879 0.68 0.681668
Target:  5'- uCAGCGCCGGuGgcGACCUUCggCgCGGc -3'
miRNA:   3'- cGUUGCGGCC-CuaCUGGAAGa-G-GCUc -5'
19240 5' -55.1 NC_004684.1 + 57913 0.68 0.702943
Target:  5'- -gGugGCCGGGcUGACCg---CCGAu -3'
miRNA:   3'- cgUugCGGCCCuACUGGaagaGGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.