Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19241 | 3' | -56.6 | NC_004684.1 | + | 56455 | 1.09 | 0.000825 |
Target: 5'- gAUCCUCAAAGGCCUGGAGCACGAGGCc -3' miRNA: 3'- -UAGGAGUUUCCGGACCUCGUGCUCCG- -5' |
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19241 | 3' | -56.6 | NC_004684.1 | + | 47500 | 0.79 | 0.120271 |
Target: 5'- uGUCCUCGAGGGUCggGGAGCGCuuGGUc -3' miRNA: 3'- -UAGGAGUUUCCGGa-CCUCGUGcuCCG- -5' |
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19241 | 3' | -56.6 | NC_004684.1 | + | 15910 | 0.76 | 0.171768 |
Target: 5'- cGUCCcggCAGAGGCCUacccggcaccGGAGCcugGCGGGGCc -3' miRNA: 3'- -UAGGa--GUUUCCGGA----------CCUCG---UGCUCCG- -5' |
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19241 | 3' | -56.6 | NC_004684.1 | + | 27711 | 0.76 | 0.176455 |
Target: 5'- -aUCUCGgcGGCCgagcGcGAGCACGAGGCa -3' miRNA: 3'- uaGGAGUuuCCGGa---C-CUCGUGCUCCG- -5' |
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19241 | 3' | -56.6 | NC_004684.1 | + | 22254 | 0.76 | 0.186173 |
Target: 5'- -aCUUCGccGAGGCCUGGGuGUACGAGaGCg -3' miRNA: 3'- uaGGAGU--UUCCGGACCU-CGUGCUC-CG- -5' |
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19241 | 3' | -56.6 | NC_004684.1 | + | 18090 | 0.76 | 0.186173 |
Target: 5'- gAUCCUgGAcggcaAGGCCaccGAGCGCGAGGCc -3' miRNA: 3'- -UAGGAgUU-----UCCGGac-CUCGUGCUCCG- -5' |
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19241 | 3' | -56.6 | NC_004684.1 | + | 44922 | 0.75 | 0.19636 |
Target: 5'- -gCCagGGAaccGGCCUGGAGCGCG-GGCg -3' miRNA: 3'- uaGGagUUU---CCGGACCUCGUGCuCCG- -5' |
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19241 | 3' | -56.6 | NC_004684.1 | + | 56922 | 0.72 | 0.318979 |
Target: 5'- uGUCCUCcu--GCCUGGAGCGCGcccGGGa -3' miRNA: 3'- -UAGGAGuuucCGGACCUCGUGC---UCCg -5' |
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19241 | 3' | -56.6 | NC_004684.1 | + | 15503 | 0.72 | 0.326813 |
Target: 5'- uUCCUgGAcaaggccgcccgGGGCCgGGcGCugGAGGCg -3' miRNA: 3'- uAGGAgUU------------UCCGGaCCuCGugCUCCG- -5' |
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19241 | 3' | -56.6 | NC_004684.1 | + | 23264 | 0.71 | 0.368101 |
Target: 5'- gGUgCUCAAcgacgcGGGCgaGGAGCGCGuGGUc -3' miRNA: 3'- -UAgGAGUU------UCCGgaCCUCGUGCuCCG- -5' |
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19241 | 3' | -56.6 | NC_004684.1 | + | 55807 | 0.71 | 0.394538 |
Target: 5'- gGUCCgguGAGcGCgUGcGAGCACGGGGUg -3' miRNA: 3'- -UAGGaguUUC-CGgAC-CUCGUGCUCCG- -5' |
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19241 | 3' | -56.6 | NC_004684.1 | + | 28260 | 0.7 | 0.403619 |
Target: 5'- -aCC-CGGccaGCCUGGuGCGCGAGGCc -3' miRNA: 3'- uaGGaGUUuc-CGGACCuCGUGCUCCG- -5' |
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19241 | 3' | -56.6 | NC_004684.1 | + | 54835 | 0.7 | 0.422172 |
Target: 5'- -gCCUgAcgugcGAGcGCCUGGAGCGCGucgaugucgguGGGCa -3' miRNA: 3'- uaGGAgU-----UUC-CGGACCUCGUGC-----------UCCG- -5' |
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19241 | 3' | -56.6 | NC_004684.1 | + | 57226 | 0.7 | 0.430687 |
Target: 5'- cUCCUCGAGcgcgguggccagcGGCggCUGGcugAGCACGAGGUc -3' miRNA: 3'- uAGGAGUUU-------------CCG--GACC---UCGUGCUCCG- -5' |
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19241 | 3' | -56.6 | NC_004684.1 | + | 8941 | 0.7 | 0.43164 |
Target: 5'- -gCCUCAGcGGGCagucgGGuccGGCACGGGGCc -3' miRNA: 3'- uaGGAGUU-UCCGga---CC---UCGUGCUCCG- -5' |
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19241 | 3' | -56.6 | NC_004684.1 | + | 55602 | 0.69 | 0.490897 |
Target: 5'- cUCCaCGGuGGCCUGGucGGCccACGGGGCc -3' miRNA: 3'- uAGGaGUUuCCGGACC--UCG--UGCUCCG- -5' |
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19241 | 3' | -56.6 | NC_004684.1 | + | 9462 | 0.69 | 0.490897 |
Target: 5'- uUCC----GGGCgCUGGAGCugGcGGGCa -3' miRNA: 3'- uAGGaguuUCCG-GACCUCGugC-UCCG- -5' |
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19241 | 3' | -56.6 | NC_004684.1 | + | 31195 | 0.69 | 0.490897 |
Target: 5'- -gCCUCGuagAGGGCCUGGAagACGAccuGGCc -3' miRNA: 3'- uaGGAGU---UUCCGGACCUcgUGCU---CCG- -5' |
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19241 | 3' | -56.6 | NC_004684.1 | + | 11642 | 0.68 | 0.511484 |
Target: 5'- cGUCCUCugcGGGCC-GGuGCaACGGGGa -3' miRNA: 3'- -UAGGAGuu-UCCGGaCCuCG-UGCUCCg -5' |
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19241 | 3' | -56.6 | NC_004684.1 | + | 57644 | 0.68 | 0.517731 |
Target: 5'- -aCCUCGcguacaccccgauuGAGGCCUGGAccccacaGCAgGuGGCc -3' miRNA: 3'- uaGGAGU--------------UUCCGGACCU-------CGUgCuCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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