miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19241 3' -56.6 NC_004684.1 + 51162 0.67 0.612042
Target:  5'- cUCCUCGGuguggccgaugcgccGGGCCaUGGAccGCGCGcccuGGCc -3'
miRNA:   3'- uAGGAGUU---------------UCCGG-ACCU--CGUGCu---CCG- -5'
19241 3' -56.6 NC_004684.1 + 13756 0.68 0.543004
Target:  5'- gGUgCUCAAcGGCCUGGcGCuCcAGGCg -3'
miRNA:   3'- -UAgGAGUUuCCGGACCuCGuGcUCCG- -5'
19241 3' -56.6 NC_004684.1 + 35974 0.68 0.553657
Target:  5'- cUCCaCGcAGGCCUGGcGCAcaguCGGGGUg -3'
miRNA:   3'- uAGGaGUuUCCGGACCuCGU----GCUCCG- -5'
19241 3' -56.6 NC_004684.1 + 63464 0.68 0.56437
Target:  5'- -gCC-CAGuuccGGCauucgGGGGCGCGAGGCc -3'
miRNA:   3'- uaGGaGUUu---CCGga---CCUCGUGCUCCG- -5'
19241 3' -56.6 NC_004684.1 + 22597 0.67 0.575137
Target:  5'- -gCUUCAAAGGCCUcGGugaggccguuacGGCGCuguggGAGGCc -3'
miRNA:   3'- uaGGAGUUUCCGGA-CC------------UCGUG-----CUCCG- -5'
19241 3' -56.6 NC_004684.1 + 36269 0.67 0.585951
Target:  5'- uGUCCggc--GGCCUGGccaAGaACGAGGCg -3'
miRNA:   3'- -UAGGaguuuCCGGACC---UCgUGCUCCG- -5'
19241 3' -56.6 NC_004684.1 + 540 0.67 0.596802
Target:  5'- -cCCggCgAAAGGCCUGGAggGCACcGGGUu -3'
miRNA:   3'- uaGGa-G-UUUCCGGACCU--CGUGcUCCG- -5'
19241 3' -56.6 NC_004684.1 + 28152 0.67 0.604416
Target:  5'- -gCCUCAAcuacGGCCUGcaauGGcuggcgugcaaccuGCGCGAGGCg -3'
miRNA:   3'- uaGGAGUUu---CCGGAC----CU--------------CGUGCUCCG- -5'
19241 3' -56.6 NC_004684.1 + 52819 0.67 0.607683
Target:  5'- cUCCUCGGuGGCCccGGcGCACcAGGUg -3'
miRNA:   3'- uAGGAGUUuCCGGa-CCuCGUGcUCCG- -5'
19241 3' -56.6 NC_004684.1 + 23750 0.68 0.53242
Target:  5'- cUgCUCGGugcgcaguucGGGCCgUGGGGCGCGgcguuGGGCg -3'
miRNA:   3'- uAgGAGUU----------UCCGG-ACCUCGUGC-----UCCG- -5'
19241 3' -56.6 NC_004684.1 + 66856 0.68 0.521912
Target:  5'- -gCCUCGAccGCCUGGccAGCACGucagcgccgguGGCg -3'
miRNA:   3'- uaGGAGUUucCGGACC--UCGUGCu----------CCG- -5'
19241 3' -56.6 NC_004684.1 + 57644 0.68 0.517731
Target:  5'- -aCCUCGcguacaccccgauuGAGGCCUGGAccccacaGCAgGuGGCc -3'
miRNA:   3'- uaGGAGU--------------UUCCGGACCU-------CGUgCuCCG- -5'
19241 3' -56.6 NC_004684.1 + 47500 0.79 0.120271
Target:  5'- uGUCCUCGAGGGUCggGGAGCGCuuGGUc -3'
miRNA:   3'- -UAGGAGUUUCCGGa-CCUCGUGcuCCG- -5'
19241 3' -56.6 NC_004684.1 + 15910 0.76 0.171768
Target:  5'- cGUCCcggCAGAGGCCUacccggcaccGGAGCcugGCGGGGCc -3'
miRNA:   3'- -UAGGa--GUUUCCGGA----------CCUCG---UGCUCCG- -5'
19241 3' -56.6 NC_004684.1 + 56922 0.72 0.318979
Target:  5'- uGUCCUCcu--GCCUGGAGCGCGcccGGGa -3'
miRNA:   3'- -UAGGAGuuucCGGACCUCGUGC---UCCg -5'
19241 3' -56.6 NC_004684.1 + 15503 0.72 0.326813
Target:  5'- uUCCUgGAcaaggccgcccgGGGCCgGGcGCugGAGGCg -3'
miRNA:   3'- uAGGAgUU------------UCCGGaCCuCGugCUCCG- -5'
19241 3' -56.6 NC_004684.1 + 55807 0.71 0.394538
Target:  5'- gGUCCgguGAGcGCgUGcGAGCACGGGGUg -3'
miRNA:   3'- -UAGGaguUUC-CGgAC-CUCGUGCUCCG- -5'
19241 3' -56.6 NC_004684.1 + 28260 0.7 0.403619
Target:  5'- -aCC-CGGccaGCCUGGuGCGCGAGGCc -3'
miRNA:   3'- uaGGaGUUuc-CGGACCuCGUGCUCCG- -5'
19241 3' -56.6 NC_004684.1 + 31195 0.69 0.490897
Target:  5'- -gCCUCGuagAGGGCCUGGAagACGAccuGGCc -3'
miRNA:   3'- uaGGAGU---UUCCGGACCUcgUGCU---CCG- -5'
19241 3' -56.6 NC_004684.1 + 9462 0.69 0.490897
Target:  5'- uUCC----GGGCgCUGGAGCugGcGGGCa -3'
miRNA:   3'- uAGGaguuUCCG-GACCUCGugC-UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.