miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19242 3' -58.2 NC_004684.1 + 31770 0.66 0.631952
Target:  5'- -uACGCCAUCgaCCCCGAgACCg--- -3'
miRNA:   3'- guUGCGGUAGagGGGGCUgUGGgagu -5'
19242 3' -58.2 NC_004684.1 + 48481 0.66 0.622368
Target:  5'- aCAGCGCCAuacgagcaaacgugUCgaagaugaugaaCCCGAUGCCCUCGc -3'
miRNA:   3'- -GUUGCGGU--------------AGagg---------GGGCUGUGGGAGU- -5'
19242 3' -58.2 NC_004684.1 + 40726 0.66 0.621304
Target:  5'- gAugGCCccgaggAUCggcaCCUCCGACACCC-CGa -3'
miRNA:   3'- gUugCGG------UAGa---GGGGGCUGUGGGaGU- -5'
19242 3' -58.2 NC_004684.1 + 48822 0.66 0.610665
Target:  5'- cCAGCGCgGUCUUgaCCUCGGcCGCCgUCGc -3'
miRNA:   3'- -GUUGCGgUAGAG--GGGGCU-GUGGgAGU- -5'
19242 3' -58.2 NC_004684.1 + 47611 0.66 0.610665
Target:  5'- --cCGCCAUCUugucgCCCCCGgcggGCACCggCAg -3'
miRNA:   3'- guuGCGGUAGA-----GGGGGC----UGUGGgaGU- -5'
19242 3' -58.2 NC_004684.1 + 13017 0.66 0.600043
Target:  5'- gCAugGCC-UCgaccccgCCCCCGGCACUUg-- -3'
miRNA:   3'- -GUugCGGuAGa------GGGGGCUGUGGGagu -5'
19242 3' -58.2 NC_004684.1 + 66461 0.66 0.600043
Target:  5'- gCGGCGUUGUCUCCaCgCCGcCACCCg-- -3'
miRNA:   3'- -GUUGCGGUAGAGG-G-GGCuGUGGGagu -5'
19242 3' -58.2 NC_004684.1 + 2027 0.67 0.578884
Target:  5'- gCGAUGaCCGUCgCCCUgGugGCCCUgGg -3'
miRNA:   3'- -GUUGC-GGUAGaGGGGgCugUGGGAgU- -5'
19242 3' -58.2 NC_004684.1 + 20375 0.67 0.557891
Target:  5'- gAAgGCCAgucgUUCCCCgaCGGCACCCg-- -3'
miRNA:   3'- gUUgCGGUa---GAGGGG--GCUGUGGGagu -5'
19242 3' -58.2 NC_004684.1 + 50414 0.68 0.50649
Target:  5'- gCAACGCCGUaaUUCCCCCGAauagcaauaCGCCgaUAa -3'
miRNA:   3'- -GUUGCGGUA--GAGGGGGCU---------GUGGgaGU- -5'
19242 3' -58.2 NC_004684.1 + 12101 0.68 0.476631
Target:  5'- gCGGCgGCCAUCacgcaaCCCCCGAC-CCCg-- -3'
miRNA:   3'- -GUUG-CGGUAGa-----GGGGGCUGuGGGagu -5'
19242 3' -58.2 NC_004684.1 + 39968 0.68 0.476631
Target:  5'- gAGCGCCAUCcccugcgCUCCgGGCACCUggUCGg -3'
miRNA:   3'- gUUGCGGUAGa------GGGGgCUGUGGG--AGU- -5'
19242 3' -58.2 NC_004684.1 + 26724 0.68 0.466872
Target:  5'- uCGGCGUCGaaaUCgaggCCCgCGACACCCUg- -3'
miRNA:   3'- -GUUGCGGU---AGa---GGGgGCUGUGGGAgu -5'
19242 3' -58.2 NC_004684.1 + 2334 0.69 0.457217
Target:  5'- -cACGCCGUCUaCCCgGACugCCg-- -3'
miRNA:   3'- guUGCGGUAGAgGGGgCUGugGGagu -5'
19242 3' -58.2 NC_004684.1 + 26616 0.69 0.438236
Target:  5'- gCGGCGUCAUCgCCaaCGACACCgUCGg -3'
miRNA:   3'- -GUUGCGGUAGaGGggGCUGUGGgAGU- -5'
19242 3' -58.2 NC_004684.1 + 13295 0.69 0.428916
Target:  5'- --uCGaCCGUUUCCCuCCGACGCCUUg- -3'
miRNA:   3'- guuGC-GGUAGAGGG-GGCUGUGGGAgu -5'
19242 3' -58.2 NC_004684.1 + 54510 0.69 0.419713
Target:  5'- gAGCGCaggCUCCCCggCGGCGgCCUCGg -3'
miRNA:   3'- gUUGCGguaGAGGGG--GCUGUgGGAGU- -5'
19242 3' -58.2 NC_004684.1 + 60543 0.7 0.401673
Target:  5'- -cGCGCCcggugCCgUCGACACCCUCGa -3'
miRNA:   3'- guUGCGGuaga-GGgGGCUGUGGGAGU- -5'
19242 3' -58.2 NC_004684.1 + 39021 0.7 0.401673
Target:  5'- gAugGCCAgCUCCCagGACACCCg-- -3'
miRNA:   3'- gUugCGGUaGAGGGggCUGUGGGagu -5'
19242 3' -58.2 NC_004684.1 + 12992 0.7 0.39901
Target:  5'- gAGCGCCGggccggguggauuaUgUCCCCCGACGCgCC-CGg -3'
miRNA:   3'- gUUGCGGU--------------AgAGGGGGCUGUG-GGaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.