miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19243 3' -58.5 NC_004684.1 + 64036 0.72 0.243481
Target:  5'- aGGCgugcuGGaGCACCGCCUGGAACGccgaaugcuucuGGUGc -3'
miRNA:   3'- aCCG-----UC-CGUGGUGGACCUUGCu-----------CCAC- -5'
19243 3' -58.5 NC_004684.1 + 62022 0.69 0.403959
Target:  5'- gGGaCGGGgGCCACggGGuugAGCGGGGUGg -3'
miRNA:   3'- aCC-GUCCgUGGUGgaCC---UUGCUCCAC- -5'
19243 3' -58.5 NC_004684.1 + 61308 0.68 0.454251
Target:  5'- cGGCA-GCACCGCCgccGGGccgccgcccucggcgGCGuAGGUGg -3'
miRNA:   3'- aCCGUcCGUGGUGGa--CCU---------------UGC-UCCAC- -5'
19243 3' -58.5 NC_004684.1 + 58811 0.69 0.377582
Target:  5'- cGGUAGGUGCCGCCUcGGAugucCGGGaUGa -3'
miRNA:   3'- aCCGUCCGUGGUGGA-CCUu---GCUCcAC- -5'
19243 3' -58.5 NC_004684.1 + 58711 0.71 0.284135
Target:  5'- aGGCGGucuGCGCCACCUGGAACa----- -3'
miRNA:   3'- aCCGUC---CGUGGUGGACCUUGcuccac -5'
19243 3' -58.5 NC_004684.1 + 57068 1.09 0.000583
Target:  5'- gUGGCAGGCACCACCUGGAACGAGGUGg -3'
miRNA:   3'- -ACCGUCCGUGGUGGACCUUGCUCCAC- -5'
19243 3' -58.5 NC_004684.1 + 55011 0.67 0.530307
Target:  5'- cGGCAaacGGCACCAgg-GGAGcCGaAGGUGg -3'
miRNA:   3'- aCCGU---CCGUGGUggaCCUU-GC-UCCAC- -5'
19243 3' -58.5 NC_004684.1 + 53728 0.68 0.450409
Target:  5'- cGGCAuGGUGCCggguucgacgGCCaGGAAcacCGAGGUGg -3'
miRNA:   3'- aCCGU-CCGUGG----------UGGaCCUU---GCUCCAC- -5'
19243 3' -58.5 NC_004684.1 + 53619 0.67 0.540683
Target:  5'- gGcGCAGGUuggUCGCCUGGAGCGccAGGc- -3'
miRNA:   3'- aC-CGUCCGu--GGUGGACCUUGC--UCCac -5'
19243 3' -58.5 NC_004684.1 + 53127 0.66 0.572187
Target:  5'- gGGUAGGUGCCGCC-GGAaaugACcGGGUc -3'
miRNA:   3'- aCCGUCCGUGGUGGaCCU----UGcUCCAc -5'
19243 3' -58.5 NC_004684.1 + 51036 0.66 0.593434
Target:  5'- cGGCAGGaugcgGCCACCgccGGuGACGAugcgcccgugGGUGa -3'
miRNA:   3'- aCCGUCCg----UGGUGGa--CC-UUGCU----------CCAC- -5'
19243 3' -58.5 NC_004684.1 + 49404 0.7 0.369051
Target:  5'- cGGuCAGcGcCACCACCUGGAGCuuGGa- -3'
miRNA:   3'- aCC-GUC-C-GUGGUGGACCUUGcuCCac -5'
19243 3' -58.5 NC_004684.1 + 49068 0.69 0.403959
Target:  5'- gGGC-GGCACCGgCgugcGGAACaGGGUGa -3'
miRNA:   3'- aCCGuCCGUGGUgGa---CCUUGcUCCAC- -5'
19243 3' -58.5 NC_004684.1 + 47629 0.69 0.377582
Target:  5'- cGGCGGGCACCGgCaGGccGCGcAGGUa -3'
miRNA:   3'- aCCGUCCGUGGUgGaCCu-UGC-UCCAc -5'
19243 3' -58.5 NC_004684.1 + 47426 0.68 0.460048
Target:  5'- cUGGUgcuccGGCACCACCUGGucGCgcagcucgcuGAGGUa -3'
miRNA:   3'- -ACCGu----CCGUGGUGGACCu-UG----------CUCCAc -5'
19243 3' -58.5 NC_004684.1 + 47217 0.7 0.369051
Target:  5'- gUGGUAGGUaugcaucagcgcACCGCCUcGGGcGCGAGGg- -3'
miRNA:   3'- -ACCGUCCG------------UGGUGGA-CCU-UGCUCCac -5'
19243 3' -58.5 NC_004684.1 + 46257 0.74 0.193702
Target:  5'- gUGcGCGGuGaCACCGCCggacacgUGGAACGGGGUGa -3'
miRNA:   3'- -AC-CGUC-C-GUGGUGG-------ACCUUGCUCCAC- -5'
19243 3' -58.5 NC_004684.1 + 44567 0.67 0.540683
Target:  5'- cGGCcuGCACCGCCgGGAACugccGGUc -3'
miRNA:   3'- aCCGucCGUGGUGGaCCUUGcu--CCAc -5'
19243 3' -58.5 NC_004684.1 + 43225 0.69 0.401269
Target:  5'- cGGC-GGCACCGCCUgcggacccugcaccGGAGCGgugcgcagcGGGUa -3'
miRNA:   3'- aCCGuCCGUGGUGGA--------------CCUUGC---------UCCAc -5'
19243 3' -58.5 NC_004684.1 + 42410 0.66 0.582791
Target:  5'- gGGCAGGaUGCCGcCCUGGGACaccGGa- -3'
miRNA:   3'- aCCGUCC-GUGGU-GGACCUUGcu-CCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.