Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19244 | 3' | -53.5 | NC_004684.1 | + | 57454 | 1.11 | 0.001352 |
Target: 5'- cGCAUGUCUCCCGACAAACUGCCGGUCc -3' miRNA: 3'- -CGUACAGAGGGCUGUUUGACGGCCAG- -5' |
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19244 | 3' | -53.5 | NC_004684.1 | + | 60582 | 0.73 | 0.461814 |
Target: 5'- gGUAUGUCUCCaCGccgcGCAcgguGCgcagGCCGGUCa -3' miRNA: 3'- -CGUACAGAGG-GC----UGUu---UGa---CGGCCAG- -5' |
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19244 | 3' | -53.5 | NC_004684.1 | + | 44553 | 0.72 | 0.491172 |
Target: 5'- ---gGUCUuggccagCCCGGCcugcaccgccggGAACUGCCGGUCg -3' miRNA: 3'- cguaCAGA-------GGGCUG------------UUUGACGGCCAG- -5' |
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19244 | 3' | -53.5 | NC_004684.1 | + | 9306 | 0.72 | 0.502534 |
Target: 5'- gGCGcG-CUCCCGGuCGAGCUGCaCGGUg -3' miRNA: 3'- -CGUaCaGAGGGCU-GUUUGACG-GCCAg -5' |
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19244 | 3' | -53.5 | NC_004684.1 | + | 49529 | 0.71 | 0.555484 |
Target: 5'- aGCGUG-CaCCCGGCGGugUGCgCGGUg -3' miRNA: 3'- -CGUACaGaGGGCUGUUugACG-GCCAg -5' |
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19244 | 3' | -53.5 | NC_004684.1 | + | 6919 | 0.71 | 0.559798 |
Target: 5'- -gGUGUUgCCCGAgGAACUGCCcggcaugcuggccgaGGUCg -3' miRNA: 3'- cgUACAGaGGGCUgUUUGACGG---------------CCAG- -5' |
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19244 | 3' | -53.5 | NC_004684.1 | + | 56691 | 0.71 | 0.574964 |
Target: 5'- uGCcgGUUgcgagccaccgcgUCCCGACcguugaggcguucGGugUGCCGGUCg -3' miRNA: 3'- -CGuaCAG-------------AGGGCUG-------------UUugACGGCCAG- -5' |
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19244 | 3' | -53.5 | NC_004684.1 | + | 34911 | 0.7 | 0.653893 |
Target: 5'- gGCAagGUCUaCCCGACcgaAAACUGcCCGG-Ca -3' miRNA: 3'- -CGUa-CAGA-GGGCUG---UUUGAC-GGCCaG- -5' |
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19244 | 3' | -53.5 | NC_004684.1 | + | 67285 | 0.7 | 0.658282 |
Target: 5'- uGCAggUGUUgcgCCgGGCGAGCUGCCaaacggcgaugacuuGGUCg -3' miRNA: 3'- -CGU--ACAGa--GGgCUGUUUGACGG---------------CCAG- -5' |
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19244 | 3' | -53.5 | NC_004684.1 | + | 54483 | 0.69 | 0.67579 |
Target: 5'- uGCAUGUCcCuuGACAAc--GCCGGUa -3' miRNA: 3'- -CGUACAGaGggCUGUUugaCGGCCAg -5' |
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19244 | 3' | -53.5 | NC_004684.1 | + | 13011 | 0.69 | 0.697522 |
Target: 5'- uUAUGUCcCCCGACGcgcccgguuACgucgccggGCCGGUCg -3' miRNA: 3'- cGUACAGaGGGCUGUu--------UGa-------CGGCCAG- -5' |
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19244 | 3' | -53.5 | NC_004684.1 | + | 62582 | 0.68 | 0.740135 |
Target: 5'- aGCuUGUC-CUCGAUcuGCgcGCCGGUCa -3' miRNA: 3'- -CGuACAGaGGGCUGuuUGa-CGGCCAG- -5' |
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19244 | 3' | -53.5 | NC_004684.1 | + | 63336 | 0.68 | 0.760836 |
Target: 5'- cCcgGUCaCCCGGCGAug-GCCGGUa -3' miRNA: 3'- cGuaCAGaGGGCUGUUugaCGGCCAg -5' |
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19244 | 3' | -53.5 | NC_004684.1 | + | 39355 | 0.68 | 0.770994 |
Target: 5'- gGCAUGaUCUCgCG-Cu--CUGCCGGUg -3' miRNA: 3'- -CGUAC-AGAGgGCuGuuuGACGGCCAg -5' |
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19244 | 3' | -53.5 | NC_004684.1 | + | 59274 | 0.68 | 0.770994 |
Target: 5'- cGCG-GUCgUCCuCGuCAAuGCUGCCGGUg -3' miRNA: 3'- -CGUaCAG-AGG-GCuGUU-UGACGGCCAg -5' |
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19244 | 3' | -53.5 | NC_004684.1 | + | 31462 | 0.67 | 0.790871 |
Target: 5'- aCGUGUCauUUCCGcGCGcGCUGCUGGUg -3' miRNA: 3'- cGUACAG--AGGGC-UGUuUGACGGCCAg -5' |
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19244 | 3' | -53.5 | NC_004684.1 | + | 25084 | 0.67 | 0.790871 |
Target: 5'- aCGUGgccgacCUCCCGGCAGGCaUGUCGcUCa -3' miRNA: 3'- cGUACa-----GAGGGCUGUUUG-ACGGCcAG- -5' |
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19244 | 3' | -53.5 | NC_004684.1 | + | 12661 | 0.67 | 0.810087 |
Target: 5'- gGCGguauUGUCUCCUGGCcuGCgaaaaCGGUCg -3' miRNA: 3'- -CGU----ACAGAGGGCUGuuUGacg--GCCAG- -5' |
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19244 | 3' | -53.5 | NC_004684.1 | + | 13715 | 0.67 | 0.810087 |
Target: 5'- ----aUCaUCCCGACccaggcGCUGUCGGUCg -3' miRNA: 3'- cguacAG-AGGGCUGuu----UGACGGCCAG- -5' |
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19244 | 3' | -53.5 | NC_004684.1 | + | 51683 | 0.67 | 0.810087 |
Target: 5'- -gGUGUCUCCgGgaGCAcgaUGCCGGUg -3' miRNA: 3'- cgUACAGAGGgC--UGUuugACGGCCAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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