miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19244 3' -53.5 NC_004684.1 + 57454 1.11 0.001352
Target:  5'- cGCAUGUCUCCCGACAAACUGCCGGUCc -3'
miRNA:   3'- -CGUACAGAGGGCUGUUUGACGGCCAG- -5'
19244 3' -53.5 NC_004684.1 + 23552 0.66 0.854699
Target:  5'- gGCAUcgGUCgcggCCUgGACAGcCUGCCGGg- -3'
miRNA:   3'- -CGUA--CAGa---GGG-CUGUUuGACGGCCag -5'
19244 3' -53.5 NC_004684.1 + 67316 0.66 0.837491
Target:  5'- gGCAuUGUCUCCuCGACAAAUaggGCCuucgcccuauccGGUUu -3'
miRNA:   3'- -CGU-ACAGAGG-GCUGUUUGa--CGG------------CCAG- -5'
19244 3' -53.5 NC_004684.1 + 25699 0.66 0.834834
Target:  5'- cGCGUGgcgCagCUGGCAugcccaacaucaugAGcCUGCCGGUCa -3'
miRNA:   3'- -CGUACa--GagGGCUGU--------------UU-GACGGCCAG- -5'
19244 3' -53.5 NC_004684.1 + 32776 0.66 0.828559
Target:  5'- aGCAUGa---CCGGguGGCUGCCGGa- -3'
miRNA:   3'- -CGUACagagGGCUguUUGACGGCCag -5'
19244 3' -53.5 NC_004684.1 + 62052 0.67 0.819422
Target:  5'- gGCAUGUCagcccaCCGcCAcccacuGCUGCaCGGUCg -3'
miRNA:   3'- -CGUACAGag----GGCuGUu-----UGACG-GCCAG- -5'
19244 3' -53.5 NC_004684.1 + 13715 0.67 0.810087
Target:  5'- ----aUCaUCCCGACccaggcGCUGUCGGUCg -3'
miRNA:   3'- cguacAG-AGGGCUGuu----UGACGGCCAG- -5'
19244 3' -53.5 NC_004684.1 + 31462 0.67 0.790871
Target:  5'- aCGUGUCauUUCCGcGCGcGCUGCUGGUg -3'
miRNA:   3'- cGUACAG--AGGGC-UGUuUGACGGCCAg -5'
19244 3' -53.5 NC_004684.1 + 25084 0.67 0.790871
Target:  5'- aCGUGgccgacCUCCCGGCAGGCaUGUCGcUCa -3'
miRNA:   3'- cGUACa-----GAGGGCUGUUUG-ACGGCcAG- -5'
19244 3' -53.5 NC_004684.1 + 13011 0.69 0.697522
Target:  5'- uUAUGUCcCCCGACGcgcccgguuACgucgccggGCCGGUCg -3'
miRNA:   3'- cGUACAGaGGGCUGUu--------UGa-------CGGCCAG- -5'
19244 3' -53.5 NC_004684.1 + 54483 0.69 0.67579
Target:  5'- uGCAUGUCcCuuGACAAc--GCCGGUa -3'
miRNA:   3'- -CGUACAGaGggCUGUUugaCGGCCAg -5'
19244 3' -53.5 NC_004684.1 + 34911 0.7 0.653893
Target:  5'- gGCAagGUCUaCCCGACcgaAAACUGcCCGG-Ca -3'
miRNA:   3'- -CGUa-CAGA-GGGCUG---UUUGAC-GGCCaG- -5'
19244 3' -53.5 NC_004684.1 + 49529 0.71 0.555484
Target:  5'- aGCGUG-CaCCCGGCGGugUGCgCGGUg -3'
miRNA:   3'- -CGUACaGaGGGCUGUUugACG-GCCAg -5'
19244 3' -53.5 NC_004684.1 + 60582 0.73 0.461814
Target:  5'- gGUAUGUCUCCaCGccgcGCAcgguGCgcagGCCGGUCa -3'
miRNA:   3'- -CGUACAGAGG-GC----UGUu---UGa---CGGCCAG- -5'
19244 3' -53.5 NC_004684.1 + 62582 0.68 0.740135
Target:  5'- aGCuUGUC-CUCGAUcuGCgcGCCGGUCa -3'
miRNA:   3'- -CGuACAGaGGGCUGuuUGa-CGGCCAG- -5'
19244 3' -53.5 NC_004684.1 + 67285 0.7 0.658282
Target:  5'- uGCAggUGUUgcgCCgGGCGAGCUGCCaaacggcgaugacuuGGUCg -3'
miRNA:   3'- -CGU--ACAGa--GGgCUGUUUGACGG---------------CCAG- -5'
19244 3' -53.5 NC_004684.1 + 56691 0.71 0.574964
Target:  5'- uGCcgGUUgcgagccaccgcgUCCCGACcguugaggcguucGGugUGCCGGUCg -3'
miRNA:   3'- -CGuaCAG-------------AGGGCUG-------------UUugACGGCCAG- -5'
19244 3' -53.5 NC_004684.1 + 6919 0.71 0.559798
Target:  5'- -gGUGUUgCCCGAgGAACUGCCcggcaugcuggccgaGGUCg -3'
miRNA:   3'- cgUACAGaGGGCUgUUUGACGG---------------CCAG- -5'
19244 3' -53.5 NC_004684.1 + 9306 0.72 0.502534
Target:  5'- gGCGcG-CUCCCGGuCGAGCUGCaCGGUg -3'
miRNA:   3'- -CGUaCaGAGGGCU-GUUUGACG-GCCAg -5'
19244 3' -53.5 NC_004684.1 + 30021 0.66 0.866195
Target:  5'- aGCGg--CUCCUGGCuGAGCgugaacgcgcgcucGCCGGUCg -3'
miRNA:   3'- -CGUacaGAGGGCUG-UUUGa-------------CGGCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.