miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19245 3' -56.5 NC_004684.1 + 1909 0.68 0.612616
Target:  5'- cCGCAccugccggacccgGCCUGCCGGgccUGGUaccggcgcacGGUGGCCGc -3'
miRNA:   3'- -GCGU-------------UGGAUGGCU---GCCA----------CCACUGGCa -5'
19245 3' -56.5 NC_004684.1 + 55395 0.68 0.601961
Target:  5'- gCGCcggaAACCUucgcugcGCUGGCGGUGGaGACCa- -3'
miRNA:   3'- -GCG----UUGGA-------UGGCUGCCACCaCUGGca -5'
19245 3' -56.5 NC_004684.1 + 62648 0.68 0.596642
Target:  5'- uCGCGGCaCUugCGGCuGUGGccgugcgcgagguccUGGCCGUa -3'
miRNA:   3'- -GCGUUG-GAugGCUGcCACC---------------ACUGGCA- -5'
19245 3' -56.5 NC_004684.1 + 53036 0.68 0.58179
Target:  5'- gGCGuacACCUGCgCGgugcccagcACGGUGGUGuCCGa -3'
miRNA:   3'- gCGU---UGGAUG-GC---------UGCCACCACuGGCa -5'
19245 3' -56.5 NC_004684.1 + 20035 0.68 0.58179
Target:  5'- cCGCcggguCCUACCGugGccUGGUGGCCa- -3'
miRNA:   3'- -GCGuu---GGAUGGCugCc-ACCACUGGca -5'
19245 3' -56.5 NC_004684.1 + 45459 0.68 0.58179
Target:  5'- aCGCcgagguugAugCUcCCGGCGGUGGUcACCGg -3'
miRNA:   3'- -GCG--------UugGAuGGCUGCCACCAcUGGCa -5'
19245 3' -56.5 NC_004684.1 + 20896 0.68 0.578616
Target:  5'- gGCAagcuggccuccaacGCCUACCGcagcggcaaGCGcGUGGUGGCCc- -3'
miRNA:   3'- gCGU--------------UGGAUGGC---------UGC-CACCACUGGca -5'
19245 3' -56.5 NC_004684.1 + 57139 0.69 0.571227
Target:  5'- gCGCGGCUgguucGCCuccauGGCGGcGGUGGCCGa -3'
miRNA:   3'- -GCGUUGGa----UGG-----CUGCCaCCACUGGCa -5'
19245 3' -56.5 NC_004684.1 + 41334 0.69 0.550249
Target:  5'- cCGCGACC-GCCGACGGccGGgccaaGGCCa- -3'
miRNA:   3'- -GCGUUGGaUGGCUGCCa-CCa----CUGGca -5'
19245 3' -56.5 NC_004684.1 + 41402 0.69 0.550249
Target:  5'- -uCGACCUACCGucGCGGUGGcGucccCCGUg -3'
miRNA:   3'- gcGUUGGAUGGC--UGCCACCaCu---GGCA- -5'
19245 3' -56.5 NC_004684.1 + 64539 0.69 0.539848
Target:  5'- aGCGGCU---CGGCGGccuUGGUGACCGg -3'
miRNA:   3'- gCGUUGGaugGCUGCC---ACCACUGGCa -5'
19245 3' -56.5 NC_004684.1 + 1636 0.69 0.539848
Target:  5'- gCGCAACCgggUACCGGCGcccaaGUGG-GGCCa- -3'
miRNA:   3'- -GCGUUGG---AUGGCUGC-----CACCaCUGGca -5'
19245 3' -56.5 NC_004684.1 + 4173 0.69 0.537776
Target:  5'- gGCAACgaGCCGcCGGUGGccgagaagauggGGCCGUu -3'
miRNA:   3'- gCGUUGgaUGGCuGCCACCa-----------CUGGCA- -5'
19245 3' -56.5 NC_004684.1 + 56091 0.69 0.529514
Target:  5'- uGCGGCaUGCUGGCGGUggcGGUGGCaCGg -3'
miRNA:   3'- gCGUUGgAUGGCUGCCA---CCACUG-GCa -5'
19245 3' -56.5 NC_004684.1 + 48768 0.69 0.529514
Target:  5'- aCGCugGACUUGCCGACGccGGgcgGGCCGa -3'
miRNA:   3'- -GCG--UUGGAUGGCUGCcaCCa--CUGGCa -5'
19245 3' -56.5 NC_004684.1 + 19776 0.7 0.509073
Target:  5'- gGCcgacGCCgagUACCGACGGcGGUGugCGg -3'
miRNA:   3'- gCGu---UGG---AUGGCUGCCaCCACugGCa -5'
19245 3' -56.5 NC_004684.1 + 8948 0.7 0.509073
Target:  5'- uGCAuauCCUGCCGcCGGUGGagaugcUGugCGa -3'
miRNA:   3'- gCGUu--GGAUGGCuGCCACC------ACugGCa -5'
19245 3' -56.5 NC_004684.1 + 38820 0.7 0.498977
Target:  5'- gGCAGCCgccgcacACCGgugGCGGgguguUGGUGACCGc -3'
miRNA:   3'- gCGUUGGa------UGGC---UGCC-----ACCACUGGCa -5'
19245 3' -56.5 NC_004684.1 + 10877 0.7 0.498977
Target:  5'- -uCGACCUcACCGACGccGGUGACCa- -3'
miRNA:   3'- gcGUUGGA-UGGCUGCcaCCACUGGca -5'
19245 3' -56.5 NC_004684.1 + 9894 0.7 0.497973
Target:  5'- aGCAGgCcGCCGACGaGUGGUccgggcuGACCGa -3'
miRNA:   3'- gCGUUgGaUGGCUGC-CACCA-------CUGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.