Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19246 | 5' | -54.4 | NC_004684.1 | + | 621 | 0.66 | 0.806903 |
Target: 5'- gGCGGCGAGuaccGcGCCGAGGuCgccggGGUGc -3' miRNA: 3'- gCGUUGCUCua--C-CGGUUCCuGa----CCAC- -5' |
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19246 | 5' | -54.4 | NC_004684.1 | + | 10626 | 0.66 | 0.806903 |
Target: 5'- cCGUAuggGCGuGcUGGCCGAGGACgaGGa- -3' miRNA: 3'- -GCGU---UGCuCuACCGGUUCCUGa-CCac -5' |
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19246 | 5' | -54.4 | NC_004684.1 | + | 43821 | 0.66 | 0.806903 |
Target: 5'- gCGCAGCGAGGUcGCCAGGuACUcGUc -3' miRNA: 3'- -GCGUUGCUCUAcCGGUUCcUGAcCAc -5' |
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19246 | 5' | -54.4 | NC_004684.1 | + | 61921 | 0.66 | 0.806903 |
Target: 5'- uCGCGGgGuGcgGGCCAcggcacccgccGGGcCUGGUGc -3' miRNA: 3'- -GCGUUgCuCuaCCGGU-----------UCCuGACCAC- -5' |
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19246 | 5' | -54.4 | NC_004684.1 | + | 4173 | 0.66 | 0.79735 |
Target: 5'- gGCAACGAGccgccgGUGGCCGAGaagaUGGg- -3' miRNA: 3'- gCGUUGCUC------UACCGGUUCcug-ACCac -5' |
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19246 | 5' | -54.4 | NC_004684.1 | + | 24898 | 0.66 | 0.79735 |
Target: 5'- gGCuACGAGAUGGCCGccgccgcgaucAGcGcGCUGGg- -3' miRNA: 3'- gCGuUGCUCUACCGGU-----------UC-C-UGACCac -5' |
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19246 | 5' | -54.4 | NC_004684.1 | + | 25959 | 0.66 | 0.787626 |
Target: 5'- aCGC--CGAGcUGGCCAA--GCUGGUGc -3' miRNA: 3'- -GCGuuGCUCuACCGGUUccUGACCAC- -5' |
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19246 | 5' | -54.4 | NC_004684.1 | + | 39005 | 0.66 | 0.787626 |
Target: 5'- aCGCGuacgGCGAGAggaUGGCCAgcucccAGGACacccGGUa -3' miRNA: 3'- -GCGU----UGCUCU---ACCGGU------UCCUGa---CCAc -5' |
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19246 | 5' | -54.4 | NC_004684.1 | + | 54268 | 0.66 | 0.787626 |
Target: 5'- uGCGugGAGAagcugccgcgcUGGCCGguGGGGCgGcGUGc -3' miRNA: 3'- gCGUugCUCU-----------ACCGGU--UCCUGaC-CAC- -5' |
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19246 | 5' | -54.4 | NC_004684.1 | + | 24106 | 0.66 | 0.787626 |
Target: 5'- uCGC-GCGGcAUcGCCAAGGACgUGGUGc -3' miRNA: 3'- -GCGuUGCUcUAcCGGUUCCUG-ACCAC- -5' |
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19246 | 5' | -54.4 | NC_004684.1 | + | 34430 | 0.66 | 0.777741 |
Target: 5'- gGCGGCGAGGuUGGCCAgcgcgAGcGcCUGGa- -3' miRNA: 3'- gCGUUGCUCU-ACCGGU-----UC-CuGACCac -5' |
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19246 | 5' | -54.4 | NC_004684.1 | + | 14686 | 0.66 | 0.777741 |
Target: 5'- gCGUGGCGAGGccgacgGGCgCGAGGAcCUGGc- -3' miRNA: 3'- -GCGUUGCUCUa-----CCG-GUUCCU-GACCac -5' |
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19246 | 5' | -54.4 | NC_004684.1 | + | 15776 | 0.67 | 0.767706 |
Target: 5'- uGCGcCGAGcgcGGCCAAGGAacacCUGGa- -3' miRNA: 3'- gCGUuGCUCua-CCGGUUCCU----GACCac -5' |
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19246 | 5' | -54.4 | NC_004684.1 | + | 358 | 0.67 | 0.767706 |
Target: 5'- aGCAGCucGGUGGCCAGGccauCgUGGUGc -3' miRNA: 3'- gCGUUGcuCUACCGGUUCcu--G-ACCAC- -5' |
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19246 | 5' | -54.4 | NC_004684.1 | + | 57083 | 0.67 | 0.765683 |
Target: 5'- uGgAACGAGGUGGCCGcccgcaugcacuGGAcCUGGa- -3' miRNA: 3'- gCgUUGCUCUACCGGUu-----------CCU-GACCac -5' |
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19246 | 5' | -54.4 | NC_004684.1 | + | 8826 | 0.67 | 0.757533 |
Target: 5'- cCGCAACGAcgccaucgcccGAcUGGCCAuGGGcCUGGa- -3' miRNA: 3'- -GCGUUGCU-----------CU-ACCGGUuCCU-GACCac -5' |
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19246 | 5' | -54.4 | NC_004684.1 | + | 4990 | 0.67 | 0.747233 |
Target: 5'- gGCAGCGcGA-GGgCAAGGGCccGGUGc -3' miRNA: 3'- gCGUUGCuCUaCCgGUUCCUGa-CCAC- -5' |
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19246 | 5' | -54.4 | NC_004684.1 | + | 29389 | 0.67 | 0.736818 |
Target: 5'- gGC-ACcAGAUGGCCGAGGACaaGGc- -3' miRNA: 3'- gCGuUGcUCUACCGGUUCCUGa-CCac -5' |
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19246 | 5' | -54.4 | NC_004684.1 | + | 43850 | 0.67 | 0.736817 |
Target: 5'- cCGCGACc-GAUGccGCCGAGGuuggugagcagGCUGGUGa -3' miRNA: 3'- -GCGUUGcuCUAC--CGGUUCC-----------UGACCAC- -5' |
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19246 | 5' | -54.4 | NC_004684.1 | + | 16157 | 0.67 | 0.73577 |
Target: 5'- gGCAuCGAccggccGAUGGCCAAGGugauccuGCUGGc- -3' miRNA: 3'- gCGUuGCU------CUACCGGUUCC-------UGACCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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