miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19246 5' -54.4 NC_004684.1 + 24106 0.66 0.787626
Target:  5'- uCGC-GCGGcAUcGCCAAGGACgUGGUGc -3'
miRNA:   3'- -GCGuUGCUcUAcCGGUUCCUG-ACCAC- -5'
19246 5' -54.4 NC_004684.1 + 24898 0.66 0.79735
Target:  5'- gGCuACGAGAUGGCCGccgccgcgaucAGcGcGCUGGg- -3'
miRNA:   3'- gCGuUGCUCUACCGGU-----------UC-C-UGACCac -5'
19246 5' -54.4 NC_004684.1 + 25054 0.75 0.309684
Target:  5'- gGCGAUGuAGGUGGCCAGGGcgGCcggguUGGUGg -3'
miRNA:   3'- gCGUUGC-UCUACCGGUUCC--UG-----ACCAC- -5'
19246 5' -54.4 NC_004684.1 + 25959 0.66 0.787626
Target:  5'- aCGC--CGAGcUGGCCAA--GCUGGUGc -3'
miRNA:   3'- -GCGuuGCUCuACCGGUUccUGACCAC- -5'
19246 5' -54.4 NC_004684.1 + 28008 0.69 0.628752
Target:  5'- aCGCggUGAucgGGCCGuacaAGGGCUGGUu -3'
miRNA:   3'- -GCGuuGCUcuaCCGGU----UCCUGACCAc -5'
19246 5' -54.4 NC_004684.1 + 29389 0.67 0.736818
Target:  5'- gGC-ACcAGAUGGCCGAGGACaaGGc- -3'
miRNA:   3'- gCGuUGcUCUACCGGUUCCUGa-CCac -5'
19246 5' -54.4 NC_004684.1 + 29425 0.68 0.717813
Target:  5'- gGCAACGAuggccuccaggacGAUGGCCuccaccgcgucgagcAGGGcgugcauGCUGGUGa -3'
miRNA:   3'- gCGUUGCU-------------CUACCGG---------------UUCC-------UGACCAC- -5'
19246 5' -54.4 NC_004684.1 + 34430 0.66 0.777741
Target:  5'- gGCGGCGAGGuUGGCCAgcgcgAGcGcCUGGa- -3'
miRNA:   3'- gCGUUGCUCU-ACCGGU-----UC-CuGACCac -5'
19246 5' -54.4 NC_004684.1 + 39005 0.66 0.787626
Target:  5'- aCGCGuacgGCGAGAggaUGGCCAgcucccAGGACacccGGUa -3'
miRNA:   3'- -GCGU----UGCUCU---ACCGGU------UCCUGa---CCAc -5'
19246 5' -54.4 NC_004684.1 + 42186 0.72 0.459408
Target:  5'- gCGCggUGAGcagugGGCCGuGGAgCUGGUGg -3'
miRNA:   3'- -GCGuuGCUCua---CCGGUuCCU-GACCAC- -5'
19246 5' -54.4 NC_004684.1 + 42412 0.68 0.694222
Target:  5'- aCGCGcCGAcGcgGGCCAagguaugggcAGGACUGGc- -3'
miRNA:   3'- -GCGUuGCU-CuaCCGGU----------UCCUGACCac -5'
19246 5' -54.4 NC_004684.1 + 43821 0.66 0.806903
Target:  5'- gCGCAGCGAGGUcGCCAGGuACUcGUc -3'
miRNA:   3'- -GCGUUGCUCUAcCGGUUCcUGAcCAc -5'
19246 5' -54.4 NC_004684.1 + 43850 0.67 0.736817
Target:  5'- cCGCGACc-GAUGccGCCGAGGuuggugagcagGCUGGUGa -3'
miRNA:   3'- -GCGUUGcuCUAC--CGGUUCC-----------UGACCAC- -5'
19246 5' -54.4 NC_004684.1 + 48961 0.72 0.469374
Target:  5'- gGCgGGCGGGGUGGCCGGGGcgggcGCgucGGUGc -3'
miRNA:   3'- gCG-UUGCUCUACCGGUUCC-----UGa--CCAC- -5'
19246 5' -54.4 NC_004684.1 + 49540 0.68 0.694222
Target:  5'- gGCGguguGCGcGGUGGCCGAcuucGGGCUGGc- -3'
miRNA:   3'- gCGU----UGCuCUACCGGUU----CCUGACCac -5'
19246 5' -54.4 NC_004684.1 + 51585 0.7 0.595919
Target:  5'- gGCGGCGAccgGGUGGuCCAAGGuCUccaGGUGu -3'
miRNA:   3'- gCGUUGCU---CUACC-GGUUCCuGA---CCAC- -5'
19246 5' -54.4 NC_004684.1 + 51969 0.68 0.694222
Target:  5'- aGCAGCaGGGUGGCCAcGGugUcGGc- -3'
miRNA:   3'- gCGUUGcUCUACCGGUuCCugA-CCac -5'
19246 5' -54.4 NC_004684.1 + 54268 0.66 0.787626
Target:  5'- uGCGugGAGAagcugccgcgcUGGCCGguGGGGCgGcGUGc -3'
miRNA:   3'- gCGUugCUCU-----------ACCGGU--UCCUGaC-CAC- -5'
19246 5' -54.4 NC_004684.1 + 55083 0.68 0.672522
Target:  5'- aCGCugUGGGAacaGGCCAAGGAgCcGGUGc -3'
miRNA:   3'- -GCGuuGCUCUa--CCGGUUCCU-GaCCAC- -5'
19246 5' -54.4 NC_004684.1 + 55249 0.73 0.42072
Target:  5'- uGCGG-GAGAUGGaaGAGGAgCUGGUGg -3'
miRNA:   3'- gCGUUgCUCUACCggUUCCU-GACCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.