miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19246 5' -54.4 NC_004684.1 + 25054 0.75 0.309684
Target:  5'- gGCGAUGuAGGUGGCCAGGGcgGCcggguUGGUGg -3'
miRNA:   3'- gCGUUGC-UCUACCGGUUCC--UG-----ACCAC- -5'
19246 5' -54.4 NC_004684.1 + 34430 0.66 0.777741
Target:  5'- gGCGGCGAGGuUGGCCAgcgcgAGcGcCUGGa- -3'
miRNA:   3'- gCGUUGCUCU-ACCGGU-----UC-CuGACCac -5'
19246 5' -54.4 NC_004684.1 + 358 0.67 0.767706
Target:  5'- aGCAGCucGGUGGCCAGGccauCgUGGUGc -3'
miRNA:   3'- gCGUUGcuCUACCGGUUCcu--G-ACCAC- -5'
19246 5' -54.4 NC_004684.1 + 4990 0.67 0.747233
Target:  5'- gGCAGCGcGA-GGgCAAGGGCccGGUGc -3'
miRNA:   3'- gCGUUGCuCUaCCgGUUCCUGa-CCAC- -5'
19246 5' -54.4 NC_004684.1 + 16157 0.67 0.73577
Target:  5'- gGCAuCGAccggccGAUGGCCAAGGugauccuGCUGGc- -3'
miRNA:   3'- gCGUuGCU------CUACCGGUUCC-------UGACCac -5'
19246 5' -54.4 NC_004684.1 + 29425 0.68 0.717813
Target:  5'- gGCAACGAuggccuccaggacGAUGGCCuccaccgcgucgagcAGGGcgugcauGCUGGUGa -3'
miRNA:   3'- gCGUUGCU-------------CUACCGG---------------UUCC-------UGACCAC- -5'
19246 5' -54.4 NC_004684.1 + 621 0.66 0.806903
Target:  5'- gGCGGCGAGuaccGcGCCGAGGuCgccggGGUGc -3'
miRNA:   3'- gCGUUGCUCua--C-CGGUUCCuGa----CCAC- -5'
19246 5' -54.4 NC_004684.1 + 24106 0.66 0.787626
Target:  5'- uCGC-GCGGcAUcGCCAAGGACgUGGUGc -3'
miRNA:   3'- -GCGuUGCUcUAcCGGUUCCUG-ACCAC- -5'
19246 5' -54.4 NC_004684.1 + 14686 0.66 0.777741
Target:  5'- gCGUGGCGAGGccgacgGGCgCGAGGAcCUGGc- -3'
miRNA:   3'- -GCGUUGCUCUa-----CCG-GUUCCU-GACCac -5'
19246 5' -54.4 NC_004684.1 + 43850 0.67 0.736817
Target:  5'- cCGCGACc-GAUGccGCCGAGGuuggugagcagGCUGGUGa -3'
miRNA:   3'- -GCGUUGcuCUAC--CGGUUCC-----------UGACCAC- -5'
19246 5' -54.4 NC_004684.1 + 22207 0.7 0.574167
Target:  5'- gCGCGGCGGGGuggUGGCCGAcuucauGGAcCUGGa- -3'
miRNA:   3'- -GCGUUGCUCU---ACCGGUU------CCU-GACCac -5'
19246 5' -54.4 NC_004684.1 + 39005 0.66 0.787626
Target:  5'- aCGCGuacgGCGAGAggaUGGCCAgcucccAGGACacccGGUa -3'
miRNA:   3'- -GCGU----UGCUCU---ACCGGU------UCCUGa---CCAc -5'
19246 5' -54.4 NC_004684.1 + 28008 0.69 0.628752
Target:  5'- aCGCggUGAucgGGCCGuacaAGGGCUGGUu -3'
miRNA:   3'- -GCGuuGCUcuaCCGGU----UCCUGACCAc -5'
19246 5' -54.4 NC_004684.1 + 15776 0.67 0.767706
Target:  5'- uGCGcCGAGcgcGGCCAAGGAacacCUGGa- -3'
miRNA:   3'- gCGUuGCUCua-CCGGUUCCU----GACCac -5'
19246 5' -54.4 NC_004684.1 + 4173 0.66 0.79735
Target:  5'- gGCAACGAGccgccgGUGGCCGAGaagaUGGg- -3'
miRNA:   3'- gCGUUGCUC------UACCGGUUCcug-ACCac -5'
19246 5' -54.4 NC_004684.1 + 21971 0.68 0.698536
Target:  5'- gGCGGCGAcaccgaggccaagguGGUGcGCCAGGGuCcGGUGg -3'
miRNA:   3'- gCGUUGCU---------------CUAC-CGGUUCCuGaCCAC- -5'
19246 5' -54.4 NC_004684.1 + 54268 0.66 0.787626
Target:  5'- uGCGugGAGAagcugccgcgcUGGCCGguGGGGCgGcGUGc -3'
miRNA:   3'- gCGUugCUCU-----------ACCGGU--UCCUGaC-CAC- -5'
19246 5' -54.4 NC_004684.1 + 62014 0.69 0.650671
Target:  5'- uCGCGACGGGGacgggGGCCAcgGGGuugaGCggGGUGg -3'
miRNA:   3'- -GCGUUGCUCUa----CCGGU--UCC----UGa-CCAC- -5'
19246 5' -54.4 NC_004684.1 + 10254 0.69 0.650671
Target:  5'- gCGCGugGAGcgGGCCAaccaacuggccAGcGACgccGGUGu -3'
miRNA:   3'- -GCGUugCUCuaCCGGU-----------UC-CUGa--CCAC- -5'
19246 5' -54.4 NC_004684.1 + 13464 0.69 0.639715
Target:  5'- aGCAGCuGGA-GGCCGAGGAC-GGc- -3'
miRNA:   3'- gCGUUGcUCUaCCGGUUCCUGaCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.