miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19247 3' -53.5 NC_004684.1 + 24321 0.67 0.803716
Target:  5'- -aGACCcg-UCGCCG--GAGCUGCu- -3'
miRNA:   3'- ggCUGGuaaAGCGGCuaCUCGACGca -5'
19247 3' -53.5 NC_004684.1 + 24870 0.69 0.680125
Target:  5'- gCCGACCA---CGgCGGUGAGC-GCGc -3'
miRNA:   3'- -GGCUGGUaaaGCgGCUACUCGaCGCa -5'
19247 3' -53.5 NC_004684.1 + 25846 0.75 0.364722
Target:  5'- cCCGGCCAgguggaagGCagaGAUGAGCUGCGg -3'
miRNA:   3'- -GGCUGGUaaag----CGg--CUACUCGACGCa -5'
19247 3' -53.5 NC_004684.1 + 29099 0.72 0.549744
Target:  5'- cCUGGCCugga-GCCG-UGAGCUGCGc -3'
miRNA:   3'- -GGCUGGuaaagCGGCuACUCGACGCa -5'
19247 3' -53.5 NC_004684.1 + 29471 0.71 0.614681
Target:  5'- gCGugCA---UGCUGGUGAGCUGCa- -3'
miRNA:   3'- gGCugGUaaaGCGGCUACUCGACGca -5'
19247 3' -53.5 NC_004684.1 + 29549 0.67 0.831364
Target:  5'- gCGGCCAUcaCGCUcagcgaGAUGAccGCUGUGUa -3'
miRNA:   3'- gGCUGGUAaaGCGG------CUACU--CGACGCA- -5'
19247 3' -53.5 NC_004684.1 + 31591 0.7 0.658379
Target:  5'- aUGACCAccgUCGCCGggGA-CUGCGc -3'
miRNA:   3'- gGCUGGUaa-AGCGGCuaCUcGACGCa -5'
19247 3' -53.5 NC_004684.1 + 34218 0.67 0.831364
Target:  5'- aCGACC---UUGCCGAggucgaGGGCcUGCGUa -3'
miRNA:   3'- gGCUGGuaaAGCGGCUa-----CUCG-ACGCA- -5'
19247 3' -53.5 NC_004684.1 + 39779 0.69 0.701689
Target:  5'- cCUGGCCGUUcucgaugCGCUGGU-AGCUGCGc -3'
miRNA:   3'- -GGCUGGUAAa------GCGGCUAcUCGACGCa -5'
19247 3' -53.5 NC_004684.1 + 40223 0.67 0.831364
Target:  5'- gUGGCCAggUCGCCGccGuAGCUG-GUg -3'
miRNA:   3'- gGCUGGUaaAGCGGCuaC-UCGACgCA- -5'
19247 3' -53.5 NC_004684.1 + 40981 0.71 0.592883
Target:  5'- cCCGcuGCCAgcgCGCCGGUG-GCgGCGUu -3'
miRNA:   3'- -GGC--UGGUaaaGCGGCUACuCGaCGCA- -5'
19247 3' -53.5 NC_004684.1 + 42320 0.75 0.394638
Target:  5'- gUCGGCCAcgUUGCCGGUgcgcgcgaacuucugGAGCUGCGc -3'
miRNA:   3'- -GGCUGGUaaAGCGGCUA---------------CUCGACGCa -5'
19247 3' -53.5 NC_004684.1 + 43726 0.67 0.822342
Target:  5'- gCCGACCAggcCGUCGGUGuacccggucAGCaGCGg -3'
miRNA:   3'- -GGCUGGUaaaGCGGCUAC---------UCGaCGCa -5'
19247 3' -53.5 NC_004684.1 + 47316 0.68 0.764423
Target:  5'- gCCGucACCGUgUCGCCGGUGuGg-GCGUc -3'
miRNA:   3'- -GGC--UGGUAaAGCGGCUACuCgaCGCA- -5'
19247 3' -53.5 NC_004684.1 + 47706 0.67 0.804665
Target:  5'- cUCGGCCAggccuugccgccgCGCCGGUaGAGC-GCGUu -3'
miRNA:   3'- -GGCUGGUaaa----------GCGGCUA-CUCGaCGCA- -5'
19247 3' -53.5 NC_004684.1 + 48934 0.68 0.754237
Target:  5'- cCCGGCCucgUCGCCGAacGGCacgucgGCGg -3'
miRNA:   3'- -GGCUGGuaaAGCGGCUacUCGa-----CGCa -5'
19247 3' -53.5 NC_004684.1 + 49866 0.68 0.751157
Target:  5'- gCGACCAcgUCGuCCGGcgUggcaccgcgcucgcGAGCUGCGUa -3'
miRNA:   3'- gGCUGGUaaAGC-GGCU--A--------------CUCGACGCA- -5'
19247 3' -53.5 NC_004684.1 + 50107 0.67 0.813123
Target:  5'- cCCGGCCAgaaaaccagCGCCGccGAGCaguUGCa- -3'
miRNA:   3'- -GGCUGGUaaa------GCGGCuaCUCG---ACGca -5'
19247 3' -53.5 NC_004684.1 + 51045 0.66 0.857154
Target:  5'- gCGGCCAc--CGCCGGUGAcgaUGCGc -3'
miRNA:   3'- gGCUGGUaaaGCGGCUACUcg-ACGCa -5'
19247 3' -53.5 NC_004684.1 + 55319 0.7 0.636538
Target:  5'- gCCGAUCGagUUCGCCGAcggcuggcaggUGAGCcugGCGc -3'
miRNA:   3'- -GGCUGGUa-AAGCGGCU-----------ACUCGa--CGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.