miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19247 3' -53.5 NC_004684.1 + 631 0.67 0.794132
Target:  5'- aCCGcGCCGaggUCGCCGggGuGCUGUa- -3'
miRNA:   3'- -GGC-UGGUaa-AGCGGCuaCuCGACGca -5'
19247 3' -53.5 NC_004684.1 + 2126 0.66 0.8732
Target:  5'- gUGGCCA--UUGCCGGguuccuggGAGCgGCGUu -3'
miRNA:   3'- gGCUGGUaaAGCGGCUa-------CUCGaCGCA- -5'
19247 3' -53.5 NC_004684.1 + 2382 0.67 0.803716
Target:  5'- aUGGCCAccUUCGCCGGgu-GCgGCGUg -3'
miRNA:   3'- gGCUGGUa-AAGCGGCUacuCGaCGCA- -5'
19247 3' -53.5 NC_004684.1 + 4055 0.67 0.803716
Target:  5'- aCCGGCCA--UCGCCGGgugaccggguggUGGGaCUGuCGa -3'
miRNA:   3'- -GGCUGGUaaAGCGGCU------------ACUC-GAC-GCa -5'
19247 3' -53.5 NC_004684.1 + 5958 0.69 0.680125
Target:  5'- cCUGGCCg---CGCCGGUGAGCgaccgGCc- -3'
miRNA:   3'- -GGCUGGuaaaGCGGCUACUCGa----CGca -5'
19247 3' -53.5 NC_004684.1 + 7437 0.71 0.592883
Target:  5'- aCUGAcCCGUUUCGCCGAcuGGCUGg-- -3'
miRNA:   3'- -GGCU-GGUAAAGCGGCUacUCGACgca -5'
19247 3' -53.5 NC_004684.1 + 7535 0.66 0.857154
Target:  5'- aCCGACCuggcCGCCG-UG-GCgGCGUu -3'
miRNA:   3'- -GGCUGGuaaaGCGGCuACuCGaCGCA- -5'
19247 3' -53.5 NC_004684.1 + 7561 0.66 0.8732
Target:  5'- aCCGGCCccggGUggCGCUGGUGcGGCUG-GUg -3'
miRNA:   3'- -GGCUGG----UAaaGCGGCUAC-UCGACgCA- -5'
19247 3' -53.5 NC_004684.1 + 9078 0.78 0.265313
Target:  5'- aUGACCcggcgUCGCCGGUGAGCUGUc- -3'
miRNA:   3'- gGCUGGuaa--AGCGGCUACUCGACGca -5'
19247 3' -53.5 NC_004684.1 + 9293 0.7 0.625606
Target:  5'- cCCGGCCAUgcUCGgcgcgcucCCGGUcGAGCUGCa- -3'
miRNA:   3'- -GGCUGGUAa-AGC--------GGCUA-CUCGACGca -5'
19247 3' -53.5 NC_004684.1 + 9531 0.66 0.847076
Target:  5'- uCCGACCGcgagcuggugCGCCGGUugGAGCcggUGCGc -3'
miRNA:   3'- -GGCUGGUaaa-------GCGGCUA--CUCG---ACGCa -5'
19247 3' -53.5 NC_004684.1 + 9844 0.77 0.293354
Target:  5'- gUCGAUCAccgcCGCCGGUGAGCUGCc- -3'
miRNA:   3'- -GGCUGGUaaa-GCGGCUACUCGACGca -5'
19247 3' -53.5 NC_004684.1 + 12264 0.79 0.215789
Target:  5'- aCCGGCCAUUUCGCCGG-GGGuUUGCa- -3'
miRNA:   3'- -GGCUGGUAAAGCGGCUaCUC-GACGca -5'
19247 3' -53.5 NC_004684.1 + 12509 0.66 0.857154
Target:  5'- uUGAgCAgugUUCGuacugcCCGAUGAGCUGCc- -3'
miRNA:   3'- gGCUgGUa--AAGC------GGCUACUCGACGca -5'
19247 3' -53.5 NC_004684.1 + 12875 0.67 0.813123
Target:  5'- cUCGuACCcc--CGCCGGUGAGC-GCGg -3'
miRNA:   3'- -GGC-UGGuaaaGCGGCUACUCGaCGCa -5'
19247 3' -53.5 NC_004684.1 + 12880 0.67 0.822342
Target:  5'- -aGGCCGc--CGCCGggGAGcCUGCGc -3'
miRNA:   3'- ggCUGGUaaaGCGGCuaCUC-GACGCa -5'
19247 3' -53.5 NC_004684.1 + 16616 0.66 0.840179
Target:  5'- aCCGACCGcg-CGgacaugggacaCCGAUGGGCgaagGUGUa -3'
miRNA:   3'- -GGCUGGUaaaGC-----------GGCUACUCGa---CGCA- -5'
19247 3' -53.5 NC_004684.1 + 18066 0.66 0.8732
Target:  5'- gCCGACCAUggcCGCCGAcGGGU--CGa -3'
miRNA:   3'- -GGCUGGUAaa-GCGGCUaCUCGacGCa -5'
19247 3' -53.5 NC_004684.1 + 19212 0.66 0.871639
Target:  5'- gCGAUagccugaGCCGGUGAGUUGUGa -3'
miRNA:   3'- gGCUGguaaag-CGGCUACUCGACGCa -5'
19247 3' -53.5 NC_004684.1 + 20139 0.66 0.856326
Target:  5'- aCGugCGguucUUCGCCGGUGAcggcccggcccuuGCgGCGUu -3'
miRNA:   3'- gGCugGUa---AAGCGGCUACU-------------CGaCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.