Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19247 | 3' | -53.5 | NC_004684.1 | + | 51045 | 0.66 | 0.857154 |
Target: 5'- gCGGCCAc--CGCCGGUGAcgaUGCGc -3' miRNA: 3'- gGCUGGUaaaGCGGCUACUcg-ACGCa -5' |
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19247 | 3' | -53.5 | NC_004684.1 | + | 63377 | 0.66 | 0.848778 |
Target: 5'- gCCGACgCGcca-GCCGAUG-GCgGCGUa -3' miRNA: 3'- -GGCUG-GUaaagCGGCUACuCGaCGCA- -5' |
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19247 | 3' | -53.5 | NC_004684.1 | + | 9531 | 0.66 | 0.847076 |
Target: 5'- uCCGACCGcgagcuggugCGCCGGUugGAGCcggUGCGc -3' miRNA: 3'- -GGCUGGUaaa-------GCGGCUA--CUCG---ACGCa -5' |
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19247 | 3' | -53.5 | NC_004684.1 | + | 2126 | 0.66 | 0.8732 |
Target: 5'- gUGGCCA--UUGCCGGguuccuggGAGCgGCGUu -3' miRNA: 3'- gGCUGGUaaAGCGGCUa-------CUCGaCGCA- -5' |
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19247 | 3' | -53.5 | NC_004684.1 | + | 7535 | 0.66 | 0.857154 |
Target: 5'- aCCGACCuggcCGCCG-UG-GCgGCGUu -3' miRNA: 3'- -GGCUGGuaaaGCGGCuACuCGaCGCA- -5' |
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19247 | 3' | -53.5 | NC_004684.1 | + | 20139 | 0.66 | 0.856326 |
Target: 5'- aCGugCGguucUUCGCCGGUGAcggcccggcccuuGCgGCGUu -3' miRNA: 3'- gGCugGUa---AAGCGGCUACU-------------CGaCGCA- -5' |
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19247 | 3' | -53.5 | NC_004684.1 | + | 18066 | 0.66 | 0.8732 |
Target: 5'- gCCGACCAUggcCGCCGAcGGGU--CGa -3' miRNA: 3'- -GGCUGGUAaa-GCGGCUaCUCGacGCa -5' |
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19247 | 3' | -53.5 | NC_004684.1 | + | 12509 | 0.66 | 0.857154 |
Target: 5'- uUGAgCAgugUUCGuacugcCCGAUGAGCUGCc- -3' miRNA: 3'- gGCUgGUa--AAGC------GGCUACUCGACGca -5' |
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19247 | 3' | -53.5 | NC_004684.1 | + | 7561 | 0.66 | 0.8732 |
Target: 5'- aCCGGCCccggGUggCGCUGGUGcGGCUG-GUg -3' miRNA: 3'- -GGCUGG----UAaaGCGGCUAC-UCGACgCA- -5' |
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19247 | 3' | -53.5 | NC_004684.1 | + | 16616 | 0.66 | 0.840179 |
Target: 5'- aCCGACCGcg-CGgacaugggacaCCGAUGGGCgaagGUGUa -3' miRNA: 3'- -GGCUGGUaaaGC-----------GGCUACUCGa---CGCA- -5' |
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19247 | 3' | -53.5 | NC_004684.1 | + | 19212 | 0.66 | 0.871639 |
Target: 5'- gCGAUagccugaGCCGGUGAGUUGUGa -3' miRNA: 3'- gGCUGguaaag-CGGCUACUCGACGCa -5' |
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19247 | 3' | -53.5 | NC_004684.1 | + | 631 | 0.67 | 0.794132 |
Target: 5'- aCCGcGCCGaggUCGCCGggGuGCUGUa- -3' miRNA: 3'- -GGC-UGGUaa-AGCGGCuaCuCGACGca -5' |
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19247 | 3' | -53.5 | NC_004684.1 | + | 64924 | 0.67 | 0.822342 |
Target: 5'- gCGACCcagGUggCGgCGGUGAGCgccugGCGg -3' miRNA: 3'- gGCUGG---UAaaGCgGCUACUCGa----CGCa -5' |
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19247 | 3' | -53.5 | NC_004684.1 | + | 50107 | 0.67 | 0.813123 |
Target: 5'- cCCGGCCAgaaaaccagCGCCGccGAGCaguUGCa- -3' miRNA: 3'- -GGCUGGUaaa------GCGGCuaCUCG---ACGca -5' |
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19247 | 3' | -53.5 | NC_004684.1 | + | 4055 | 0.67 | 0.803716 |
Target: 5'- aCCGGCCA--UCGCCGGgugaccggguggUGGGaCUGuCGa -3' miRNA: 3'- -GGCUGGUaaAGCGGCU------------ACUC-GAC-GCa -5' |
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19247 | 3' | -53.5 | NC_004684.1 | + | 2382 | 0.67 | 0.803716 |
Target: 5'- aUGGCCAccUUCGCCGGgu-GCgGCGUg -3' miRNA: 3'- gGCUGGUa-AAGCGGCUacuCGaCGCA- -5' |
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19247 | 3' | -53.5 | NC_004684.1 | + | 24321 | 0.67 | 0.803716 |
Target: 5'- -aGACCcg-UCGCCG--GAGCUGCu- -3' miRNA: 3'- ggCUGGuaaAGCGGCuaCUCGACGca -5' |
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19247 | 3' | -53.5 | NC_004684.1 | + | 29549 | 0.67 | 0.831364 |
Target: 5'- gCGGCCAUcaCGCUcagcgaGAUGAccGCUGUGUa -3' miRNA: 3'- gGCUGGUAaaGCGG------CUACU--CGACGCA- -5' |
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19247 | 3' | -53.5 | NC_004684.1 | + | 12875 | 0.67 | 0.813123 |
Target: 5'- cUCGuACCcc--CGCCGGUGAGC-GCGg -3' miRNA: 3'- -GGC-UGGuaaaGCGGCUACUCGaCGCa -5' |
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19247 | 3' | -53.5 | NC_004684.1 | + | 43726 | 0.67 | 0.822342 |
Target: 5'- gCCGACCAggcCGUCGGUGuacccggucAGCaGCGg -3' miRNA: 3'- -GGCUGGUaaaGCGGCUAC---------UCGaCGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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