miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19247 3' -53.5 NC_004684.1 + 58028 1.09 0.002154
Target:  5'- gCCGACCAUUUCGCCGAUGAGCUGCGUc -3'
miRNA:   3'- -GGCUGGUAAAGCGGCUACUCGACGCA- -5'
19247 3' -53.5 NC_004684.1 + 12264 0.79 0.215789
Target:  5'- aCCGGCCAUUUCGCCGG-GGGuUUGCa- -3'
miRNA:   3'- -GGCUGGUAAAGCGGCUaCUC-GACGca -5'
19247 3' -53.5 NC_004684.1 + 9078 0.78 0.265313
Target:  5'- aUGACCcggcgUCGCCGGUGAGCUGUc- -3'
miRNA:   3'- gGCUGGuaa--AGCGGCUACUCGACGca -5'
19247 3' -53.5 NC_004684.1 + 9844 0.77 0.293354
Target:  5'- gUCGAUCAccgcCGCCGGUGAGCUGCc- -3'
miRNA:   3'- -GGCUGGUaaa-GCGGCUACUCGACGca -5'
19247 3' -53.5 NC_004684.1 + 25846 0.75 0.364722
Target:  5'- cCCGGCCAgguggaagGCagaGAUGAGCUGCGg -3'
miRNA:   3'- -GGCUGGUaaag----CGg--CUACUCGACGCa -5'
19247 3' -53.5 NC_004684.1 + 42320 0.75 0.394638
Target:  5'- gUCGGCCAcgUUGCCGGUgcgcgcgaacuucugGAGCUGCGc -3'
miRNA:   3'- -GGCUGGUaaAGCGGCUA---------------CUCGACGCa -5'
19247 3' -53.5 NC_004684.1 + 29099 0.72 0.549744
Target:  5'- cCUGGCCugga-GCCG-UGAGCUGCGc -3'
miRNA:   3'- -GGCUGGuaaagCGGCuACUCGACGCa -5'
19247 3' -53.5 NC_004684.1 + 63811 0.72 0.549744
Target:  5'- gCGACCGUggUGCUGGUGAuGgUGCGg -3'
miRNA:   3'- gGCUGGUAaaGCGGCUACU-CgACGCa -5'
19247 3' -53.5 NC_004684.1 + 65283 0.71 0.592883
Target:  5'- uCCGACCAcgccgCGCCGuaguGCUGCGc -3'
miRNA:   3'- -GGCUGGUaaa--GCGGCuacuCGACGCa -5'
19247 3' -53.5 NC_004684.1 + 7437 0.71 0.592883
Target:  5'- aCUGAcCCGUUUCGCCGAcuGGCUGg-- -3'
miRNA:   3'- -GGCU-GGUAAAGCGGCUacUCGACgca -5'
19247 3' -53.5 NC_004684.1 + 40981 0.71 0.592883
Target:  5'- cCCGcuGCCAgcgCGCCGGUG-GCgGCGUu -3'
miRNA:   3'- -GGC--UGGUaaaGCGGCUACuCGaCGCA- -5'
19247 3' -53.5 NC_004684.1 + 29471 0.71 0.614681
Target:  5'- gCGugCA---UGCUGGUGAGCUGCa- -3'
miRNA:   3'- gGCugGUaaaGCGGCUACUCGACGca -5'
19247 3' -53.5 NC_004684.1 + 9293 0.7 0.625606
Target:  5'- cCCGGCCAUgcUCGgcgcgcucCCGGUcGAGCUGCa- -3'
miRNA:   3'- -GGCUGGUAa-AGC--------GGCUA-CUCGACGca -5'
19247 3' -53.5 NC_004684.1 + 59023 0.7 0.625606
Target:  5'- cUCGugCuugUCGCCGGUGGGCaGCu- -3'
miRNA:   3'- -GGCugGuaaAGCGGCUACUCGaCGca -5'
19247 3' -53.5 NC_004684.1 + 55319 0.7 0.636538
Target:  5'- gCCGAUCGagUUCGCCGAcggcuggcaggUGAGCcugGCGc -3'
miRNA:   3'- -GGCUGGUa-AAGCGGCU-----------ACUCGa--CGCa -5'
19247 3' -53.5 NC_004684.1 + 55797 0.7 0.647466
Target:  5'- gUGACCGggUgGuCCGGUGAGC-GCGUg -3'
miRNA:   3'- gGCUGGUaaAgC-GGCUACUCGaCGCA- -5'
19247 3' -53.5 NC_004684.1 + 31591 0.7 0.658379
Target:  5'- aUGACCAccgUCGCCGggGA-CUGCGc -3'
miRNA:   3'- gGCUGGUaa-AGCGGCuaCUcGACGCa -5'
19247 3' -53.5 NC_004684.1 + 65765 0.69 0.680125
Target:  5'- uUGGCCGccgcgCGCCGGUGGGC-GCGc -3'
miRNA:   3'- gGCUGGUaaa--GCGGCUACUCGaCGCa -5'
19247 3' -53.5 NC_004684.1 + 5958 0.69 0.680125
Target:  5'- cCUGGCCg---CGCCGGUGAGCgaccgGCc- -3'
miRNA:   3'- -GGCUGGuaaaGCGGCUACUCGa----CGca -5'
19247 3' -53.5 NC_004684.1 + 24870 0.69 0.680125
Target:  5'- gCCGACCA---CGgCGGUGAGC-GCGc -3'
miRNA:   3'- -GGCUGGUaaaGCgGCUACUCGaCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.