miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19247 3' -53.5 NC_004684.1 + 20139 0.66 0.856326
Target:  5'- aCGugCGguucUUCGCCGGUGAcggcccggcccuuGCgGCGUu -3'
miRNA:   3'- gGCugGUa---AAGCGGCUACU-------------CGaCGCA- -5'
19247 3' -53.5 NC_004684.1 + 24321 0.67 0.803716
Target:  5'- -aGACCcg-UCGCCG--GAGCUGCu- -3'
miRNA:   3'- ggCUGGuaaAGCGGCuaCUCGACGca -5'
19247 3' -53.5 NC_004684.1 + 2382 0.67 0.803716
Target:  5'- aUGGCCAccUUCGCCGGgu-GCgGCGUg -3'
miRNA:   3'- gGCUGGUa-AAGCGGCUacuCGaCGCA- -5'
19247 3' -53.5 NC_004684.1 + 4055 0.67 0.803716
Target:  5'- aCCGGCCA--UCGCCGGgugaccggguggUGGGaCUGuCGa -3'
miRNA:   3'- -GGCUGGUaaAGCGGCU------------ACUC-GAC-GCa -5'
19247 3' -53.5 NC_004684.1 + 12880 0.67 0.822342
Target:  5'- -aGGCCGc--CGCCGggGAGcCUGCGc -3'
miRNA:   3'- ggCUGGUaaaGCGGCuaCUC-GACGCa -5'
19247 3' -53.5 NC_004684.1 + 55823 0.67 0.822342
Target:  5'- gCGAgCAcggggUGCCGGUGAGCggguacUGCGUg -3'
miRNA:   3'- gGCUgGUaaa--GCGGCUACUCG------ACGCA- -5'
19247 3' -53.5 NC_004684.1 + 64924 0.67 0.822342
Target:  5'- gCGACCcagGUggCGgCGGUGAGCgccugGCGg -3'
miRNA:   3'- gGCUGG---UAaaGCgGCUACUCGa----CGCa -5'
19247 3' -53.5 NC_004684.1 + 9531 0.66 0.847076
Target:  5'- uCCGACCGcgagcuggugCGCCGGUugGAGCcggUGCGc -3'
miRNA:   3'- -GGCUGGUaaa-------GCGGCUA--CUCG---ACGCa -5'
19247 3' -53.5 NC_004684.1 + 63377 0.66 0.848778
Target:  5'- gCCGACgCGcca-GCCGAUG-GCgGCGUa -3'
miRNA:   3'- -GGCUG-GUaaagCGGCUACuCGaCGCA- -5'
19247 3' -53.5 NC_004684.1 + 47316 0.68 0.764423
Target:  5'- gCCGucACCGUgUCGCCGGUGuGg-GCGUc -3'
miRNA:   3'- -GGC--UGGUAaAGCGGCUACuCgaCGCA- -5'
19247 3' -53.5 NC_004684.1 + 48934 0.68 0.754237
Target:  5'- cCCGGCCucgUCGCCGAacGGCacgucgGCGg -3'
miRNA:   3'- -GGCUGGuaaAGCGGCUacUCGa-----CGCa -5'
19247 3' -53.5 NC_004684.1 + 39779 0.69 0.701689
Target:  5'- cCUGGCCGUUcucgaugCGCUGGU-AGCUGCGc -3'
miRNA:   3'- -GGCUGGUAAa------GCGGCUAcUCGACGCa -5'
19247 3' -53.5 NC_004684.1 + 9844 0.77 0.293354
Target:  5'- gUCGAUCAccgcCGCCGGUGAGCUGCc- -3'
miRNA:   3'- -GGCUGGUaaa-GCGGCUACUCGACGca -5'
19247 3' -53.5 NC_004684.1 + 29099 0.72 0.549744
Target:  5'- cCUGGCCugga-GCCG-UGAGCUGCGc -3'
miRNA:   3'- -GGCUGGuaaagCGGCuACUCGACGCa -5'
19247 3' -53.5 NC_004684.1 + 63811 0.72 0.549744
Target:  5'- gCGACCGUggUGCUGGUGAuGgUGCGg -3'
miRNA:   3'- gGCUGGUAaaGCGGCUACU-CgACGCa -5'
19247 3' -53.5 NC_004684.1 + 7437 0.71 0.592883
Target:  5'- aCUGAcCCGUUUCGCCGAcuGGCUGg-- -3'
miRNA:   3'- -GGCU-GGUAAAGCGGCUacUCGACgca -5'
19247 3' -53.5 NC_004684.1 + 55319 0.7 0.636538
Target:  5'- gCCGAUCGagUUCGCCGAcggcuggcaggUGAGCcugGCGc -3'
miRNA:   3'- -GGCUGGUa-AAGCGGCU-----------ACUCGa--CGCa -5'
19247 3' -53.5 NC_004684.1 + 55797 0.7 0.647466
Target:  5'- gUGACCGggUgGuCCGGUGAGC-GCGUg -3'
miRNA:   3'- gGCUGGUaaAgC-GGCUACUCGaCGCA- -5'
19247 3' -53.5 NC_004684.1 + 5958 0.69 0.680125
Target:  5'- cCUGGCCg---CGCCGGUGAGCgaccgGCc- -3'
miRNA:   3'- -GGCUGGuaaaGCGGCUACUCGa----CGca -5'
19247 3' -53.5 NC_004684.1 + 65765 0.69 0.680125
Target:  5'- uUGGCCGccgcgCGCCGGUGGGC-GCGc -3'
miRNA:   3'- gGCUGGUaaa--GCGGCUACUCGaCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.