miRNA display CGI


Results 41 - 60 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19248 3' -60.6 NC_004684.1 + 23541 0.66 0.416198
Target:  5'- aUGCUGCCGau-GCGCCUGUcgugcggGGACGa -3'
miRNA:   3'- cACGGCGGUgguCGUGGACGa------CCUGU- -5'
19248 3' -60.6 NC_004684.1 + 52206 0.66 0.416198
Target:  5'- uUGCCGCUGCgCAGCACCagucccaggUGCgugGcGGCGg -3'
miRNA:   3'- cACGGCGGUG-GUCGUGG---------ACGa--C-CUGU- -5'
19248 3' -60.6 NC_004684.1 + 24758 0.66 0.416198
Target:  5'- cUGgCGgCACCAGCACCgGCgGcGGCGg -3'
miRNA:   3'- cACgGCgGUGGUCGUGGaCGaC-CUGU- -5'
19248 3' -60.6 NC_004684.1 + 28570 0.66 0.416198
Target:  5'- --cCCGCCACCGGUgugcggcggcuGCCUGCcGGuCGg -3'
miRNA:   3'- cacGGCGGUGGUCG-----------UGGACGaCCuGU- -5'
19248 3' -60.6 NC_004684.1 + 23133 0.66 0.416198
Target:  5'- uGUGCCGCCGUCGacuGCGCCauggucacGCUGGAgCAg -3'
miRNA:   3'- -CACGGCGGUGGU---CGUGGa-------CGACCU-GU- -5'
19248 3' -60.6 NC_004684.1 + 9505 0.66 0.413471
Target:  5'- -aGCCcgGCCACCAGCcagcaccgguccugGCgUGCcgGGACGc -3'
miRNA:   3'- caCGG--CGGUGGUCG--------------UGgACGa-CCUGU- -5'
19248 3' -60.6 NC_004684.1 + 12206 0.66 0.413471
Target:  5'- -cGCCGCCGCCAGCGgUgcguucuccgggggUGCUuccGGCAg -3'
miRNA:   3'- caCGGCGGUGGUCGUgG--------------ACGAc--CUGU- -5'
19248 3' -60.6 NC_004684.1 + 57499 0.67 0.407151
Target:  5'- -cGCCGCaCGCaGGUGCCUGCgccGGAUc -3'
miRNA:   3'- caCGGCG-GUGgUCGUGGACGa--CCUGu -5'
19248 3' -60.6 NC_004684.1 + 59158 0.67 0.407151
Target:  5'- uUGUCGgCGCUGGUGCCUGCgaaGGugAg -3'
miRNA:   3'- cACGGCgGUGGUCGUGGACGa--CCugU- -5'
19248 3' -60.6 NC_004684.1 + 20230 0.67 0.407151
Target:  5'- -gGCCGCCGCUacGGUGCUc-CUGGGCAc -3'
miRNA:   3'- caCGGCGGUGG--UCGUGGacGACCUGU- -5'
19248 3' -60.6 NC_004684.1 + 1697 0.67 0.407151
Target:  5'- cUGgCGCgCAUCgagcgcaagaAGCGCCUGCUGGcGCAg -3'
miRNA:   3'- cACgGCG-GUGG----------UCGUGGACGACC-UGU- -5'
19248 3' -60.6 NC_004684.1 + 26816 0.67 0.405356
Target:  5'- -gGCCGguugaugaacgaCACCAGCGCgCUGgUGGACc -3'
miRNA:   3'- caCGGCg-----------GUGGUCGUG-GACgACCUGu -5'
19248 3' -60.6 NC_004684.1 + 47891 0.67 0.398228
Target:  5'- cGUGCCGUCccacCCAGCAgCgGCUGG-Cu -3'
miRNA:   3'- -CACGGCGGu---GGUCGUgGaCGACCuGu -5'
19248 3' -60.6 NC_004684.1 + 3567 0.67 0.395576
Target:  5'- -cGCCGCgccauccgcaccauCACCAGCACCacgGUcgcGGACAc -3'
miRNA:   3'- caCGGCG--------------GUGGUCGUGGa--CGa--CCUGU- -5'
19248 3' -60.6 NC_004684.1 + 1963 0.67 0.389432
Target:  5'- -cGCCGCaCGCCAGCGCagcGcCUGGcGCGc -3'
miRNA:   3'- caCGGCG-GUGGUCGUGga-C-GACC-UGU- -5'
19248 3' -60.6 NC_004684.1 + 41619 0.67 0.389432
Target:  5'- cGUGCCGCCgguggaGCCGGaCGCCagGCcggGGAUc -3'
miRNA:   3'- -CACGGCGG------UGGUC-GUGGa-CGa--CCUGu -5'
19248 3' -60.6 NC_004684.1 + 34732 0.67 0.389432
Target:  5'- aUGCCGCCGCCAG-GCCUuGCcaaccGGCAc -3'
miRNA:   3'- cACGGCGGUGGUCgUGGA-CGac---CUGU- -5'
19248 3' -60.6 NC_004684.1 + 1211 0.67 0.389432
Target:  5'- -gGCCaCCACCAcCACCaccgGCUGGAUc -3'
miRNA:   3'- caCGGcGGUGGUcGUGGa---CGACCUGu -5'
19248 3' -60.6 NC_004684.1 + 15281 0.67 0.389432
Target:  5'- -gGUgGCCACCAGC-CCgacguuugGCUGGcGCGa -3'
miRNA:   3'- caCGgCGGUGGUCGuGGa-------CGACC-UGU- -5'
19248 3' -60.6 NC_004684.1 + 1540 0.67 0.388559
Target:  5'- -gGUgGCCACCAGCggcccccacaaccGCCUGCUGa--- -3'
miRNA:   3'- caCGgCGGUGGUCG-------------UGGACGACcugu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.