miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19248 5' -58.8 NC_004684.1 + 8739 0.69 0.400215
Target:  5'- gAUGUUCGccgCCGCGC-CCGGCGAGc- -3'
miRNA:   3'- aUGCAGGUa--GGCGCGuGGCCGUUCca -5'
19248 5' -58.8 NC_004684.1 + 24136 0.69 0.406485
Target:  5'- gGCGacauggccgugcucUCCGgcCCGCGCGCUGGCGAGa- -3'
miRNA:   3'- aUGC--------------AGGUa-GGCGCGUGGCCGUUCca -5'
19248 5' -58.8 NC_004684.1 + 35785 0.69 0.409191
Target:  5'- cGCGcUCCAUCgugGCGCAguccCCGGCGAcGGUg -3'
miRNA:   3'- aUGC-AGGUAGg--CGCGU----GGCCGUU-CCA- -5'
19248 5' -58.8 NC_004684.1 + 66577 0.68 0.418291
Target:  5'- -gUGUCCAUgCGgGcCGCCacGGCGAGGUg -3'
miRNA:   3'- auGCAGGUAgGCgC-GUGG--CCGUUCCA- -5'
19248 5' -58.8 NC_004684.1 + 57029 0.68 0.418291
Target:  5'- gUGCGcgCgAUCuCGCGCAuguccuccCCGGCGGGGUc -3'
miRNA:   3'- -AUGCa-GgUAG-GCGCGU--------GGCCGUUCCA- -5'
19248 5' -58.8 NC_004684.1 + 54498 0.68 0.427514
Target:  5'- aACG-CCGguaagcucguaCCGCGCucACCGGCGGGGg -3'
miRNA:   3'- aUGCaGGUa----------GGCGCG--UGGCCGUUCCa -5'
19248 5' -58.8 NC_004684.1 + 39150 0.68 0.427514
Target:  5'- cGgGUCCA-CCGCGCugugcuCCGGguGGGc -3'
miRNA:   3'- aUgCAGGUaGGCGCGu-----GGCCguUCCa -5'
19248 5' -58.8 NC_004684.1 + 19674 0.68 0.427514
Target:  5'- cGCGcUCUAcCgGCGCGgCGGCAAGGc -3'
miRNA:   3'- aUGC-AGGUaGgCGCGUgGCCGUUCCa -5'
19248 5' -58.8 NC_004684.1 + 26405 0.68 0.436855
Target:  5'- aACGccgCCAcCgGCGCGCUGGCAgcgGGGUu -3'
miRNA:   3'- aUGCa--GGUaGgCGCGUGGCCGU---UCCA- -5'
19248 5' -58.8 NC_004684.1 + 33654 0.68 0.436855
Target:  5'- gGCGUCCuggCCGCGCugCGuCGAGu- -3'
miRNA:   3'- aUGCAGGua-GGCGCGugGCcGUUCca -5'
19248 5' -58.8 NC_004684.1 + 37707 0.68 0.446313
Target:  5'- gUACGcaaCCA-CCuuGCGC-CCGGCGAGGUg -3'
miRNA:   3'- -AUGCa--GGUaGG--CGCGuGGCCGUUCCA- -5'
19248 5' -58.8 NC_004684.1 + 60594 0.68 0.455885
Target:  5'- gGCGUCguaguggccguCGUCCaGUGCACCGGCGAu-- -3'
miRNA:   3'- aUGCAG-----------GUAGG-CGCGUGGCCGUUcca -5'
19248 5' -58.8 NC_004684.1 + 4132 0.68 0.465565
Target:  5'- cAgGUCCAggaGCGCAUCGGCGcGGa -3'
miRNA:   3'- aUgCAGGUaggCGCGUGGCCGUuCCa -5'
19248 5' -58.8 NC_004684.1 + 25623 0.68 0.465565
Target:  5'- cGCGUCCGUaCGCcCACUGGCucaaccGGGUg -3'
miRNA:   3'- aUGCAGGUAgGCGcGUGGCCGu-----UCCA- -5'
19248 5' -58.8 NC_004684.1 + 38734 0.67 0.475351
Target:  5'- cUGCGUcaccgCCGUCuCGCgGCACCGGaacGGGUa -3'
miRNA:   3'- -AUGCA-----GGUAG-GCG-CGUGGCCgu-UCCA- -5'
19248 5' -58.8 NC_004684.1 + 43285 0.67 0.485239
Target:  5'- cACGUCC-UUgGCGaUGCCGcGCGAGGUc -3'
miRNA:   3'- aUGCAGGuAGgCGC-GUGGC-CGUUCCA- -5'
19248 5' -58.8 NC_004684.1 + 45653 0.67 0.492219
Target:  5'- cGCGgccgaCCAUCUGCGCguagagguuuuuugACCGGguAGGc -3'
miRNA:   3'- aUGCa----GGUAGGCGCG--------------UGGCCguUCCa -5'
19248 5' -58.8 NC_004684.1 + 7398 0.67 0.495224
Target:  5'- -cCGUCCAauaCUGCgGCGCgugCGGCAAGGUc -3'
miRNA:   3'- auGCAGGUa--GGCG-CGUG---GCCGUUCCA- -5'
19248 5' -58.8 NC_004684.1 + 37629 0.67 0.505301
Target:  5'- aACG-CCGUCgGUGCGCUGGCcauGGc -3'
miRNA:   3'- aUGCaGGUAGgCGCGUGGCCGuu-CCa -5'
19248 5' -58.8 NC_004684.1 + 11641 0.67 0.515465
Target:  5'- -uCGUCC-UCUGCGgGCCGGUgcaacGGGGa -3'
miRNA:   3'- auGCAGGuAGGCGCgUGGCCG-----UUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.