miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19248 5' -58.8 NC_004684.1 + 58216 1.05 0.001108
Target:  5'- cUACGUCCAUCCGCGCACCGGCAAGGUc -3'
miRNA:   3'- -AUGCAGGUAGGCGCGUGGCCGUUCCA- -5'
19248 5' -58.8 NC_004684.1 + 20611 0.74 0.192417
Target:  5'- aGCGUCUAcCUGgGCACCGGCGAGc- -3'
miRNA:   3'- aUGCAGGUaGGCgCGUGGCCGUUCca -5'
19248 5' -58.8 NC_004684.1 + 47349 0.73 0.230442
Target:  5'- cGCGUUCA-CCGCGCugaUGGCGGGGUc -3'
miRNA:   3'- aUGCAGGUaGGCGCGug-GCCGUUCCA- -5'
19248 5' -58.8 NC_004684.1 + 27828 0.72 0.236365
Target:  5'- gGCGgccugaUCCGUCCgGUGCuguCCGGCGAGGa -3'
miRNA:   3'- aUGC------AGGUAGG-CGCGu--GGCCGUUCCa -5'
19248 5' -58.8 NC_004684.1 + 41241 0.72 0.236365
Target:  5'- cAUGUCCucgAUCUGCGCgGCCaGCGAGGUg -3'
miRNA:   3'- aUGCAGG---UAGGCGCG-UGGcCGUUCCA- -5'
19248 5' -58.8 NC_004684.1 + 13636 0.72 0.26134
Target:  5'- cACGUUCGccgCCGCGCACCuGCGuGGUg -3'
miRNA:   3'- aUGCAGGUa--GGCGCGUGGcCGUuCCA- -5'
19248 5' -58.8 NC_004684.1 + 60036 0.72 0.267911
Target:  5'- aUGCGUUC-UCCacggcGCGCACCGGC-GGGUu -3'
miRNA:   3'- -AUGCAGGuAGG-----CGCGUGGCCGuUCCA- -5'
19248 5' -58.8 NC_004684.1 + 16942 0.71 0.281451
Target:  5'- gUGCGUUCAUCCGCGagGCCuGCAAGcGg -3'
miRNA:   3'- -AUGCAGGUAGGCGCg-UGGcCGUUC-Ca -5'
19248 5' -58.8 NC_004684.1 + 65453 0.71 0.281451
Target:  5'- cGCGgCCA-CCGUGCGCCGGUAccAGGc -3'
miRNA:   3'- aUGCaGGUaGGCGCGUGGCCGU--UCCa -5'
19248 5' -58.8 NC_004684.1 + 65761 0.71 0.295529
Target:  5'- gGCGUuggCCG-CCGCGCGCCGGUggGc- -3'
miRNA:   3'- aUGCA---GGUaGGCGCGUGGCCGuuCca -5'
19248 5' -58.8 NC_004684.1 + 55801 0.71 0.295529
Target:  5'- -uCGUCCAg--GCGCACCGGCGggcuGGUg -3'
miRNA:   3'- auGCAGGUaggCGCGUGGCCGUu---CCA- -5'
19248 5' -58.8 NC_004684.1 + 52244 0.71 0.302771
Target:  5'- gGCGgCCAgCUGCGCGCUGGCGuGGa -3'
miRNA:   3'- aUGCaGGUaGGCGCGUGGCCGUuCCa -5'
19248 5' -58.8 NC_004684.1 + 25052 0.7 0.357269
Target:  5'- gGCGcagcUCCAgaaguUCgCGCGCACCGGCAAcGUg -3'
miRNA:   3'- aUGC----AGGU-----AG-GCGCGUGGCCGUUcCA- -5'
19248 5' -58.8 NC_004684.1 + 12617 0.7 0.357269
Target:  5'- cGCGcaCCuUgCGgGCACCGGCGAGGa -3'
miRNA:   3'- aUGCa-GGuAgGCgCGUGGCCGUUCCa -5'
19248 5' -58.8 NC_004684.1 + 18517 0.69 0.364757
Target:  5'- gGCGUCCcggucaucgccccGUUCGCGCACUGGCGc--- -3'
miRNA:   3'- aUGCAGG-------------UAGGCGCGUGGCCGUucca -5'
19248 5' -58.8 NC_004684.1 + 65796 0.69 0.374054
Target:  5'- gGCGaCCGaugCCGUGCACCGGgcAGGUg -3'
miRNA:   3'- aUGCaGGUa--GGCGCGUGGCCguUCCA- -5'
19248 5' -58.8 NC_004684.1 + 40402 0.69 0.382645
Target:  5'- cGCG-CCcgCCGCGCucgcACCGGCcuGGa -3'
miRNA:   3'- aUGCaGGuaGGCGCG----UGGCCGuuCCa -5'
19248 5' -58.8 NC_004684.1 + 62585 0.69 0.382645
Target:  5'- -uUGUCCucgAUCUGCGCGCCGGuCAuGGc -3'
miRNA:   3'- auGCAGG---UAGGCGCGUGGCC-GUuCCa -5'
19248 5' -58.8 NC_004684.1 + 24139 0.69 0.390488
Target:  5'- -cCGUaCCcgCUGCGCACCGcuccgguGCAGGGUc -3'
miRNA:   3'- auGCA-GGuaGGCGCGUGGC-------CGUUCCA- -5'
19248 5' -58.8 NC_004684.1 + 39608 0.69 0.391365
Target:  5'- ----aCCG-CCGCGCACCgucgGGCGGGGUg -3'
miRNA:   3'- augcaGGUaGGCGCGUGG----CCGUUCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.