miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19248 5' -58.8 NC_004684.1 + 1773 0.67 0.519554
Target:  5'- --aGUCCAUggaGCGCGCCaacagcugcgagaagGGCGAGGUc -3'
miRNA:   3'- augCAGGUAgg-CGCGUGG---------------CCGUUCCA- -5'
19248 5' -58.8 NC_004684.1 + 4132 0.68 0.465565
Target:  5'- cAgGUCCAggaGCGCAUCGGCGcGGa -3'
miRNA:   3'- aUgCAGGUaggCGCGUGGCCGUuCCa -5'
19248 5' -58.8 NC_004684.1 + 7327 0.66 0.577953
Target:  5'- cACGggccgCCGggCCGCGCGCCacgaguGCGAGGc -3'
miRNA:   3'- aUGCa----GGUa-GGCGCGUGGc-----CGUUCCa -5'
19248 5' -58.8 NC_004684.1 + 7398 0.67 0.495224
Target:  5'- -cCGUCCAauaCUGCgGCGCgugCGGCAAGGUc -3'
miRNA:   3'- auGCAGGUa--GGCG-CGUG---GCCGUUCCA- -5'
19248 5' -58.8 NC_004684.1 + 8739 0.69 0.400215
Target:  5'- gAUGUUCGccgCCGCGC-CCGGCGAGc- -3'
miRNA:   3'- aUGCAGGUa--GGCGCGuGGCCGUUCca -5'
19248 5' -58.8 NC_004684.1 + 11641 0.67 0.515465
Target:  5'- -uCGUCC-UCUGCGgGCCGGUgcaacGGGGa -3'
miRNA:   3'- auGCAGGuAGGCGCgUGGCCG-----UUCCa -5'
19248 5' -58.8 NC_004684.1 + 12617 0.7 0.357269
Target:  5'- cGCGcaCCuUgCGgGCACCGGCGAGGa -3'
miRNA:   3'- aUGCa-GGuAgGCgCGUGGCCGUUCCa -5'
19248 5' -58.8 NC_004684.1 + 13636 0.72 0.26134
Target:  5'- cACGUUCGccgCCGCGCACCuGCGuGGUg -3'
miRNA:   3'- aUGCAGGUa--GGCGCGUGGcCGUuCCA- -5'
19248 5' -58.8 NC_004684.1 + 16215 0.66 0.556879
Target:  5'- cGCgGUCCAUggcCCgGCGCAUCGGCcacaccGAGGa -3'
miRNA:   3'- aUG-CAGGUA---GG-CGCGUGGCCG------UUCCa -5'
19248 5' -58.8 NC_004684.1 + 16942 0.71 0.281451
Target:  5'- gUGCGUUCAUCCGCGagGCCuGCAAGcGg -3'
miRNA:   3'- -AUGCAGGUAGGCGCg-UGGcCGUUC-Ca -5'
19248 5' -58.8 NC_004684.1 + 18517 0.69 0.364757
Target:  5'- gGCGUCCcggucaucgccccGUUCGCGCACUGGCGc--- -3'
miRNA:   3'- aUGCAGG-------------UAGGCGCGUGGCCGUucca -5'
19248 5' -58.8 NC_004684.1 + 19674 0.68 0.427514
Target:  5'- cGCGcUCUAcCgGCGCGgCGGCAAGGc -3'
miRNA:   3'- aUGC-AGGUaGgCGCGUgGCCGUUCCa -5'
19248 5' -58.8 NC_004684.1 + 20611 0.74 0.192417
Target:  5'- aGCGUCUAcCUGgGCACCGGCGAGc- -3'
miRNA:   3'- aUGCAGGUaGGCgCGUGGCCGUUCca -5'
19248 5' -58.8 NC_004684.1 + 21852 0.66 0.546425
Target:  5'- -cUGUCCccCgGUGCGCCGGUcgaaGAGGUg -3'
miRNA:   3'- auGCAGGuaGgCGCGUGGCCG----UUCCA- -5'
19248 5' -58.8 NC_004684.1 + 24136 0.69 0.406485
Target:  5'- gGCGacauggccgugcucUCCGgcCCGCGCGCUGGCGAGa- -3'
miRNA:   3'- aUGC--------------AGGUa-GGCGCGUGGCCGUUCca -5'
19248 5' -58.8 NC_004684.1 + 24139 0.69 0.390488
Target:  5'- -cCGUaCCcgCUGCGCACCGcuccgguGCAGGGUc -3'
miRNA:   3'- auGCA-GGuaGGCGCGUGGC-------CGUUCCA- -5'
19248 5' -58.8 NC_004684.1 + 25052 0.7 0.357269
Target:  5'- gGCGcagcUCCAgaaguUCgCGCGCACCGGCAAcGUg -3'
miRNA:   3'- aUGC----AGGU-----AG-GCGCGUGGCCGUUcCA- -5'
19248 5' -58.8 NC_004684.1 + 25388 0.66 0.566338
Target:  5'- cUACG-CCG-CCGCGCACagCGGCGgccaguaccaaugGGGUg -3'
miRNA:   3'- -AUGCaGGUaGGCGCGUG--GCCGU-------------UCCA- -5'
19248 5' -58.8 NC_004684.1 + 25623 0.68 0.465565
Target:  5'- cGCGUCCGUaCGCcCACUGGCucaaccGGGUg -3'
miRNA:   3'- aUGCAGGUAgGCGcGUGGCCGu-----UCCA- -5'
19248 5' -58.8 NC_004684.1 + 26405 0.68 0.436855
Target:  5'- aACGccgCCAcCgGCGCGCUGGCAgcgGGGUu -3'
miRNA:   3'- aUGCa--GGUaGgCGCGUGGCCGU---UCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.