miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19248 5' -58.8 NC_004684.1 + 49872 0.66 0.546425
Target:  5'- gGCGguUCCAcaggauggcgaaUCCGuCGCGCCGGaCAuGGUg -3'
miRNA:   3'- aUGC--AGGU------------AGGC-GCGUGGCC-GUuCCA- -5'
19248 5' -58.8 NC_004684.1 + 54498 0.68 0.427514
Target:  5'- aACG-CCGguaagcucguaCCGCGCucACCGGCGGGGg -3'
miRNA:   3'- aUGCaGGUa----------GGCGCG--UGGCCGUUCCa -5'
19248 5' -58.8 NC_004684.1 + 26405 0.68 0.436855
Target:  5'- aACGccgCCAcCgGCGCGCUGGCAgcgGGGUu -3'
miRNA:   3'- aUGCa--GGUaGgCGCGUGGCCGU---UCCA- -5'
19248 5' -58.8 NC_004684.1 + 37707 0.68 0.446313
Target:  5'- gUACGcaaCCA-CCuuGCGC-CCGGCGAGGUg -3'
miRNA:   3'- -AUGCa--GGUaGG--CGCGuGGCCGUUCCA- -5'
19248 5' -58.8 NC_004684.1 + 4132 0.68 0.465565
Target:  5'- cAgGUCCAggaGCGCAUCGGCGcGGa -3'
miRNA:   3'- aUgCAGGUaggCGCGUGGCCGUuCCa -5'
19248 5' -58.8 NC_004684.1 + 43285 0.67 0.485239
Target:  5'- cACGUCC-UUgGCGaUGCCGcGCGAGGUc -3'
miRNA:   3'- aUGCAGGuAGgCGC-GUGGC-CGUUCCA- -5'
19248 5' -58.8 NC_004684.1 + 45653 0.67 0.492219
Target:  5'- cGCGgccgaCCAUCUGCGCguagagguuuuuugACCGGguAGGc -3'
miRNA:   3'- aUGCa----GGUAGGCGCG--------------UGGCCguUCCa -5'
19248 5' -58.8 NC_004684.1 + 37629 0.67 0.505301
Target:  5'- aACG-CCGUCgGUGCGCUGGCcauGGc -3'
miRNA:   3'- aUGCaGGUAGgCGCGUGGCCGuu-CCa -5'
19248 5' -58.8 NC_004684.1 + 1773 0.67 0.519554
Target:  5'- --aGUCCAUggaGCGCGCCaacagcugcgagaagGGCGAGGUc -3'
miRNA:   3'- augCAGGUAgg-CGCGUGG---------------CCGUUCCA- -5'
19248 5' -58.8 NC_004684.1 + 19674 0.68 0.427514
Target:  5'- cGCGcUCUAcCgGCGCGgCGGCAAGGc -3'
miRNA:   3'- aUGC-AGGUaGgCGCGUgGCCGUUCCa -5'
19248 5' -58.8 NC_004684.1 + 35785 0.69 0.409191
Target:  5'- cGCGcUCCAUCgugGCGCAguccCCGGCGAcGGUg -3'
miRNA:   3'- aUGC-AGGUAGg--CGCGU----GGCCGUU-CCA- -5'
19248 5' -58.8 NC_004684.1 + 8739 0.69 0.400215
Target:  5'- gAUGUUCGccgCCGCGC-CCGGCGAGc- -3'
miRNA:   3'- aUGCAGGUa--GGCGCGuGGCCGUUCca -5'
19248 5' -58.8 NC_004684.1 + 20611 0.74 0.192417
Target:  5'- aGCGUCUAcCUGgGCACCGGCGAGc- -3'
miRNA:   3'- aUGCAGGUaGGCgCGUGGCCGUUCca -5'
19248 5' -58.8 NC_004684.1 + 13636 0.72 0.26134
Target:  5'- cACGUUCGccgCCGCGCACCuGCGuGGUg -3'
miRNA:   3'- aUGCAGGUa--GGCGCGUGGcCGUuCCA- -5'
19248 5' -58.8 NC_004684.1 + 65453 0.71 0.281451
Target:  5'- cGCGgCCA-CCGUGCGCCGGUAccAGGc -3'
miRNA:   3'- aUGCaGGUaGGCGCGUGGCCGU--UCCa -5'
19248 5' -58.8 NC_004684.1 + 65761 0.71 0.295529
Target:  5'- gGCGUuggCCG-CCGCGCGCCGGUggGc- -3'
miRNA:   3'- aUGCA---GGUaGGCGCGUGGCCGuuCca -5'
19248 5' -58.8 NC_004684.1 + 12617 0.7 0.357269
Target:  5'- cGCGcaCCuUgCGgGCACCGGCGAGGa -3'
miRNA:   3'- aUGCa-GGuAgGCgCGUGGCCGUUCCa -5'
19248 5' -58.8 NC_004684.1 + 25052 0.7 0.357269
Target:  5'- gGCGcagcUCCAgaaguUCgCGCGCACCGGCAAcGUg -3'
miRNA:   3'- aUGC----AGGU-----AG-GCGCGUGGCCGUUcCA- -5'
19248 5' -58.8 NC_004684.1 + 65796 0.69 0.374054
Target:  5'- gGCGaCCGaugCCGUGCACCGGgcAGGUg -3'
miRNA:   3'- aUGCaGGUa--GGCGCGUGGCCguUCCA- -5'
19248 5' -58.8 NC_004684.1 + 24139 0.69 0.390488
Target:  5'- -cCGUaCCcgCUGCGCACCGcuccgguGCAGGGUc -3'
miRNA:   3'- auGCA-GGuaGGCGCGUGGC-------CGUUCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.