Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19248 | 5' | -58.8 | NC_004684.1 | + | 65796 | 0.69 | 0.374054 |
Target: 5'- gGCGaCCGaugCCGUGCACCGGgcAGGUg -3' miRNA: 3'- aUGCaGGUa--GGCGCGUGGCCguUCCA- -5' |
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19248 | 5' | -58.8 | NC_004684.1 | + | 24139 | 0.69 | 0.390488 |
Target: 5'- -cCGUaCCcgCUGCGCACCGcuccgguGCAGGGUc -3' miRNA: 3'- auGCA-GGuaGGCGCGUGGC-------CGUUCCA- -5' |
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19248 | 5' | -58.8 | NC_004684.1 | + | 8739 | 0.69 | 0.400215 |
Target: 5'- gAUGUUCGccgCCGCGC-CCGGCGAGc- -3' miRNA: 3'- aUGCAGGUa--GGCGCGuGGCCGUUCca -5' |
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19248 | 5' | -58.8 | NC_004684.1 | + | 35785 | 0.69 | 0.409191 |
Target: 5'- cGCGcUCCAUCgugGCGCAguccCCGGCGAcGGUg -3' miRNA: 3'- aUGC-AGGUAGg--CGCGU----GGCCGUU-CCA- -5' |
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19248 | 5' | -58.8 | NC_004684.1 | + | 40402 | 0.69 | 0.382645 |
Target: 5'- cGCG-CCcgCCGCGCucgcACCGGCcuGGa -3' miRNA: 3'- aUGCaGGuaGGCGCG----UGGCCGuuCCa -5' |
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19248 | 5' | -58.8 | NC_004684.1 | + | 39608 | 0.69 | 0.391365 |
Target: 5'- ----aCCG-CCGCGCACCgucgGGCGGGGUg -3' miRNA: 3'- augcaGGUaGGCGCGUGG----CCGUUCCA- -5' |
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19248 | 5' | -58.8 | NC_004684.1 | + | 24136 | 0.69 | 0.406485 |
Target: 5'- gGCGacauggccgugcucUCCGgcCCGCGCGCUGGCGAGa- -3' miRNA: 3'- aUGC--------------AGGUa-GGCGCGUGGCCGUUCca -5' |
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19248 | 5' | -58.8 | NC_004684.1 | + | 66577 | 0.68 | 0.418291 |
Target: 5'- -gUGUCCAUgCGgGcCGCCacGGCGAGGUg -3' miRNA: 3'- auGCAGGUAgGCgC-GUGG--CCGUUCCA- -5' |
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19248 | 5' | -58.8 | NC_004684.1 | + | 57029 | 0.68 | 0.418291 |
Target: 5'- gUGCGcgCgAUCuCGCGCAuguccuccCCGGCGGGGUc -3' miRNA: 3'- -AUGCa-GgUAG-GCGCGU--------GGCCGUUCCA- -5' |
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19248 | 5' | -58.8 | NC_004684.1 | + | 39150 | 0.68 | 0.427514 |
Target: 5'- cGgGUCCA-CCGCGCugugcuCCGGguGGGc -3' miRNA: 3'- aUgCAGGUaGGCGCGu-----GGCCguUCCa -5' |
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19248 | 5' | -58.8 | NC_004684.1 | + | 33654 | 0.68 | 0.436855 |
Target: 5'- gGCGUCCuggCCGCGCugCGuCGAGu- -3' miRNA: 3'- aUGCAGGua-GGCGCGugGCcGUUCca -5' |
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19248 | 5' | -58.8 | NC_004684.1 | + | 62585 | 0.69 | 0.382645 |
Target: 5'- -uUGUCCucgAUCUGCGCGCCGGuCAuGGc -3' miRNA: 3'- auGCAGG---UAGGCGCGUGGCC-GUuCCa -5' |
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19248 | 5' | -58.8 | NC_004684.1 | + | 18517 | 0.69 | 0.364757 |
Target: 5'- gGCGUCCcggucaucgccccGUUCGCGCACUGGCGc--- -3' miRNA: 3'- aUGCAGG-------------UAGGCGCGUGGCCGUucca -5' |
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19248 | 5' | -58.8 | NC_004684.1 | + | 52244 | 0.71 | 0.302771 |
Target: 5'- gGCGgCCAgCUGCGCGCUGGCGuGGa -3' miRNA: 3'- aUGCaGGUaGGCGCGUGGCCGUuCCa -5' |
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19248 | 5' | -58.8 | NC_004684.1 | + | 55801 | 0.71 | 0.295529 |
Target: 5'- -uCGUCCAg--GCGCACCGGCGggcuGGUg -3' miRNA: 3'- auGCAGGUaggCGCGUGGCCGUu---CCA- -5' |
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19248 | 5' | -58.8 | NC_004684.1 | + | 16942 | 0.71 | 0.281451 |
Target: 5'- gUGCGUUCAUCCGCGagGCCuGCAAGcGg -3' miRNA: 3'- -AUGCAGGUAGGCGCg-UGGcCGUUC-Ca -5' |
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19248 | 5' | -58.8 | NC_004684.1 | + | 60036 | 0.72 | 0.267911 |
Target: 5'- aUGCGUUC-UCCacggcGCGCACCGGC-GGGUu -3' miRNA: 3'- -AUGCAGGuAGG-----CGCGUGGCCGuUCCA- -5' |
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19248 | 5' | -58.8 | NC_004684.1 | + | 27828 | 0.72 | 0.236365 |
Target: 5'- gGCGgccugaUCCGUCCgGUGCuguCCGGCGAGGa -3' miRNA: 3'- aUGC------AGGUAGG-CGCGu--GGCCGUUCCa -5' |
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19248 | 5' | -58.8 | NC_004684.1 | + | 41241 | 0.72 | 0.236365 |
Target: 5'- cAUGUCCucgAUCUGCGCgGCCaGCGAGGUg -3' miRNA: 3'- aUGCAGG---UAGGCGCG-UGGcCGUUCCA- -5' |
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19248 | 5' | -58.8 | NC_004684.1 | + | 7327 | 0.66 | 0.577953 |
Target: 5'- cACGggccgCCGggCCGCGCGCCacgaguGCGAGGc -3' miRNA: 3'- aUGCa----GGUa-GGCGCGUGGc-----CGUUCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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