miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19251 5' -57.5 NC_004684.1 + 29686 0.69 0.43164
Target:  5'- -aGaCCGCGCGUGCgCGCGucaacGUcgUGGGCc -3'
miRNA:   3'- aaC-GGCGUGCGCG-GCGU-----CAuaACCUG- -5'
19251 5' -57.5 NC_004684.1 + 64865 0.68 0.460765
Target:  5'- -aGgUGCGCaGCGuCCGCAGUGccGGGCg -3'
miRNA:   3'- aaCgGCGUG-CGC-GGCGUCAUaaCCUG- -5'
19251 5' -57.5 NC_004684.1 + 55716 0.68 0.470702
Target:  5'- -aGCUGCuuGCGCgGCGGUcacGUUGGcCg -3'
miRNA:   3'- aaCGGCGugCGCGgCGUCA---UAACCuG- -5'
19251 5' -57.5 NC_004684.1 + 65767 0.68 0.470702
Target:  5'- -gGCCGcCGCGCGCCGg-----UGGGCg -3'
miRNA:   3'- aaCGGC-GUGCGCGGCgucauaACCUG- -5'
19251 5' -57.5 NC_004684.1 + 17888 0.68 0.47873
Target:  5'- -gGCCGCuacacccccgACGCGCCGCugcacaucUGGACc -3'
miRNA:   3'- aaCGGCG----------UGCGCGGCGucaua---ACCUG- -5'
19251 5' -57.5 NC_004684.1 + 58773 0.68 0.480748
Target:  5'- -gGCUGCACuGCGCa-CAGUGUgGGGCc -3'
miRNA:   3'- aaCGGCGUG-CGCGgcGUCAUAaCCUG- -5'
19251 5' -57.5 NC_004684.1 + 33697 0.68 0.490897
Target:  5'- cUGCCGCugGCGaggguguccagCGCGGUggUGGuGCa -3'
miRNA:   3'- aACGGCGugCGCg----------GCGUCAuaACC-UG- -5'
19251 5' -57.5 NC_004684.1 + 12500 0.68 0.490897
Target:  5'- -gGCCGCcuCGUGCCGCAcguuGUGcaGGGCc -3'
miRNA:   3'- aaCGGCGu-GCGCGGCGU----CAUaaCCUG- -5'
19251 5' -57.5 NC_004684.1 + 20636 0.68 0.490897
Target:  5'- -cGCCGCcUGCGuCCGCAcgc-UGGACa -3'
miRNA:   3'- aaCGGCGuGCGC-GGCGUcauaACCUG- -5'
19251 5' -57.5 NC_004684.1 + 24869 0.68 0.490897
Target:  5'- -cGCCGaccacggcggugaGCGCGCCGUugaucgcguuggccuGGUcGUUGGACa -3'
miRNA:   3'- aaCGGCg------------UGCGCGGCG---------------UCA-UAACCUG- -5'
19251 5' -57.5 NC_004684.1 + 450 0.68 0.490897
Target:  5'- -cGCUGCGCGCaUCGUGGccgUGGACa -3'
miRNA:   3'- aaCGGCGUGCGcGGCGUCauaACCUG- -5'
19251 5' -57.5 NC_004684.1 + 54624 0.68 0.501144
Target:  5'- gUGUgCGCGCGCGaggaCGgGGUGUugUGGGCg -3'
miRNA:   3'- aACG-GCGUGCGCg---GCgUCAUA--ACCUG- -5'
19251 5' -57.5 NC_004684.1 + 33662 0.67 0.511484
Target:  5'- -gGCCGCGCuGCGUCG-AGUAguucGGGCc -3'
miRNA:   3'- aaCGGCGUG-CGCGGCgUCAUaa--CCUG- -5'
19251 5' -57.5 NC_004684.1 + 26771 0.67 0.511484
Target:  5'- -gGCCGCGCgGCGgugaucaaCGUGGUGcUGGACg -3'
miRNA:   3'- aaCGGCGUG-CGCg-------GCGUCAUaACCUG- -5'
19251 5' -57.5 NC_004684.1 + 12795 0.67 0.511484
Target:  5'- -cGCgCGCACGCGCgCGCgauAGUAccUGGGa -3'
miRNA:   3'- aaCG-GCGUGCGCG-GCG---UCAUa-ACCUg -5'
19251 5' -57.5 NC_004684.1 + 2412 0.67 0.511484
Target:  5'- -aGCCGCAgaccCGCGUCGCGGUcaucGACc -3'
miRNA:   3'- aaCGGCGU----GCGCGGCGUCAuaacCUG- -5'
19251 5' -57.5 NC_004684.1 + 42415 0.67 0.511484
Target:  5'- -cGCCGaCGCGgGCCaaGGUAU-GGGCa -3'
miRNA:   3'- aaCGGC-GUGCgCGGcgUCAUAaCCUG- -5'
19251 5' -57.5 NC_004684.1 + 55553 0.67 0.521912
Target:  5'- -cGCCGCugGcCGCCGUGGcccggUGGcCg -3'
miRNA:   3'- aaCGGCGugC-GCGGCGUCaua--ACCuG- -5'
19251 5' -57.5 NC_004684.1 + 1767 0.67 0.521912
Target:  5'- -aGCUGCGCGCGUgGC-----UGGACg -3'
miRNA:   3'- aaCGGCGUGCGCGgCGucauaACCUG- -5'
19251 5' -57.5 NC_004684.1 + 22157 0.67 0.52926
Target:  5'- cUGCCGgGCcugaccagcaccaaGCGCCGCA----UGGACg -3'
miRNA:   3'- aACGGCgUG--------------CGCGGCGUcauaACCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.