miRNA display CGI


Results 1 - 20 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19251 5' -57.5 NC_004684.1 + 59988 1.07 0.000778
Target:  5'- cUUGCCGCACGCGCCGCAGUAUUGGACg -3'
miRNA:   3'- -AACGGCGUGCGCGGCGUCAUAACCUG- -5'
19251 5' -57.5 NC_004684.1 + 16516 0.84 0.038348
Target:  5'- gUGCCGUAUGCGCCGCAGUccUGGGg -3'
miRNA:   3'- aACGGCGUGCGCGGCGUCAuaACCUg -5'
19251 5' -57.5 NC_004684.1 + 28395 0.76 0.149963
Target:  5'- -cGCCGUGCGUGaCGcCGGUGUUGGACc -3'
miRNA:   3'- aaCGGCGUGCGCgGC-GUCAUAACCUG- -5'
19251 5' -57.5 NC_004684.1 + 51821 0.74 0.212551
Target:  5'- -gGCCGCGCGCGCUGCGc---UGGAg -3'
miRNA:   3'- aaCGGCGUGCGCGGCGUcauaACCUg -5'
19251 5' -57.5 NC_004684.1 + 23217 0.73 0.250938
Target:  5'- cUGgCGCGCGCcggguucaucgccguGCCGCAGUAUUGcGAg -3'
miRNA:   3'- aACgGCGUGCG---------------CGGCGUCAUAAC-CUg -5'
19251 5' -57.5 NC_004684.1 + 42177 0.72 0.274945
Target:  5'- -cGCCGCACuGCGCggugaGCAGUGggccgUGGAg -3'
miRNA:   3'- aaCGGCGUG-CGCGg----CGUCAUa----ACCUg -5'
19251 5' -57.5 NC_004684.1 + 7913 0.72 0.274945
Target:  5'- -gGCCGCugGC-CgCGCAGguggUGGACa -3'
miRNA:   3'- aaCGGCGugCGcG-GCGUCaua-ACCUG- -5'
19251 5' -57.5 NC_004684.1 + 63168 0.71 0.311287
Target:  5'- -cGCCGCGCagGCGCaUGCAGUcgUGGcugGCg -3'
miRNA:   3'- aaCGGCGUG--CGCG-GCGUCAuaACC---UG- -5'
19251 5' -57.5 NC_004684.1 + 59122 0.71 0.311287
Target:  5'- -cGCCGCAgguCGCGgCGCAcGUGgcgGGACu -3'
miRNA:   3'- aaCGGCGU---GCGCgGCGU-CAUaa-CCUG- -5'
19251 5' -57.5 NC_004684.1 + 31480 0.71 0.318204
Target:  5'- -cGCUGCugGUGCCggagcccacguauGCAGUGUcggGGACc -3'
miRNA:   3'- aaCGGCGugCGCGG-------------CGUCAUAa--CCUG- -5'
19251 5' -57.5 NC_004684.1 + 65141 0.71 0.318979
Target:  5'- -cGCCGCGCugaucagcgugGCGuuGCGGU--UGGGCa -3'
miRNA:   3'- aaCGGCGUG-----------CGCggCGUCAuaACCUG- -5'
19251 5' -57.5 NC_004684.1 + 64804 0.7 0.342907
Target:  5'- -cGCCGUugGUGCUGUcgAGUucgUGGGCc -3'
miRNA:   3'- aaCGGCGugCGCGGCG--UCAua-ACCUG- -5'
19251 5' -57.5 NC_004684.1 + 17692 0.7 0.376778
Target:  5'- -cGCCgaGCGCGUGCC-CGGUGcccUGGACa -3'
miRNA:   3'- aaCGG--CGUGCGCGGcGUCAUa--ACCUG- -5'
19251 5' -57.5 NC_004684.1 + 43668 0.7 0.376778
Target:  5'- -cGCCGCcagcgauguugaGCGCGCCGCcGcccagGUUGGAg -3'
miRNA:   3'- aaCGGCG------------UGCGCGGCGuCa----UAACCUg -5'
19251 5' -57.5 NC_004684.1 + 41279 0.69 0.403619
Target:  5'- -gGUCGgACaGCGCCGaGGUGUUGGAg -3'
miRNA:   3'- aaCGGCgUG-CGCGGCgUCAUAACCUg -5'
19251 5' -57.5 NC_004684.1 + 66738 0.69 0.403619
Target:  5'- cUGUCGUGCGCGUCGguGUccUUGGGg -3'
miRNA:   3'- aACGGCGUGCGCGGCguCAu-AACCUg -5'
19251 5' -57.5 NC_004684.1 + 47281 0.69 0.403619
Target:  5'- gUGCCGC-CGC-CCaGCGGUGgcUGGACc -3'
miRNA:   3'- aACGGCGuGCGcGG-CGUCAUa-ACCUG- -5'
19251 5' -57.5 NC_004684.1 + 4459 0.69 0.412832
Target:  5'- -gGCCGCACGUGCgCGCgAGgccgucGUUGGcCg -3'
miRNA:   3'- aaCGGCGUGCGCG-GCG-UCa-----UAACCuG- -5'
19251 5' -57.5 NC_004684.1 + 40983 0.69 0.412832
Target:  5'- -cGCUGCcaGCGCGCCGguGgcggcGUUGGcCa -3'
miRNA:   3'- aaCGGCG--UGCGCGGCguCa----UAACCuG- -5'
19251 5' -57.5 NC_004684.1 + 3512 0.69 0.422173
Target:  5'- -cGCCGCAauCGCCGaCGGg--UGGGCc -3'
miRNA:   3'- aaCGGCGUgcGCGGC-GUCauaACCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.