miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19251 5' -57.5 NC_004684.1 + 58630 0.66 0.56437
Target:  5'- -gGCgGCugGUGCCGCGc---UGGGCc -3'
miRNA:   3'- aaCGgCGugCGCGGCGUcauaACCUG- -5'
19251 5' -57.5 NC_004684.1 + 450 0.68 0.490897
Target:  5'- -cGCUGCGCGCaUCGUGGccgUGGACa -3'
miRNA:   3'- aaCGGCGUGCGcGGCGUCauaACCUG- -5'
19251 5' -57.5 NC_004684.1 + 54624 0.68 0.501144
Target:  5'- gUGUgCGCGCGCGaggaCGgGGUGUugUGGGCg -3'
miRNA:   3'- aACG-GCGUGCGCg---GCgUCAUA--ACCUG- -5'
19251 5' -57.5 NC_004684.1 + 42415 0.67 0.511484
Target:  5'- -cGCCGaCGCGgGCCaaGGUAU-GGGCa -3'
miRNA:   3'- aaCGGC-GUGCgCGGcgUCAUAaCCUG- -5'
19251 5' -57.5 NC_004684.1 + 55553 0.67 0.521912
Target:  5'- -cGCCGCugGcCGCCGUGGcccggUGGcCg -3'
miRNA:   3'- aaCGGCGugC-GCGGCGUCaua--ACCuG- -5'
19251 5' -57.5 NC_004684.1 + 37129 0.67 0.53242
Target:  5'- gUGCCGCcagcgcACuGCGCCGcCAGUucUGGGa -3'
miRNA:   3'- aACGGCG------UG-CGCGGC-GUCAuaACCUg -5'
19251 5' -57.5 NC_004684.1 + 37469 0.67 0.543004
Target:  5'- -gGCCGCACaGCGCCGUAuaggaggccucGUGUacGACc -3'
miRNA:   3'- aaCGGCGUG-CGCGGCGU-----------CAUAacCUG- -5'
19251 5' -57.5 NC_004684.1 + 47315 0.67 0.553657
Target:  5'- -gGCCGuCAcCGUGUCGCcGGUG-UGGGCg -3'
miRNA:   3'- aaCGGC-GU-GCGCGGCG-UCAUaACCUG- -5'
19251 5' -57.5 NC_004684.1 + 7517 0.67 0.557935
Target:  5'- -cGCCGCGCGCGUgacccgacugaucaaCuucgacGCGGUGcUGGACc -3'
miRNA:   3'- aaCGGCGUGCGCG---------------G------CGUCAUaACCUG- -5'
19251 5' -57.5 NC_004684.1 + 58773 0.68 0.480748
Target:  5'- -gGCUGCACuGCGCa-CAGUGUgGGGCc -3'
miRNA:   3'- aaCGGCGUG-CGCGgcGUCAUAaCCUG- -5'
19251 5' -57.5 NC_004684.1 + 65767 0.68 0.470702
Target:  5'- -gGCCGcCGCGCGCCGg-----UGGGCg -3'
miRNA:   3'- aaCGGC-GUGCGCGGCgucauaACCUG- -5'
19251 5' -57.5 NC_004684.1 + 29686 0.69 0.43164
Target:  5'- -aGaCCGCGCGUGCgCGCGucaacGUcgUGGGCc -3'
miRNA:   3'- aaC-GGCGUGCGCG-GCGU-----CAuaACCUG- -5'
19251 5' -57.5 NC_004684.1 + 16516 0.84 0.038348
Target:  5'- gUGCCGUAUGCGCCGCAGUccUGGGg -3'
miRNA:   3'- aACGGCGUGCGCGGCGUCAuaACCUg -5'
19251 5' -57.5 NC_004684.1 + 51821 0.74 0.212551
Target:  5'- -gGCCGCGCGCGCUGCGc---UGGAg -3'
miRNA:   3'- aaCGGCGUGCGCGGCGUcauaACCUg -5'
19251 5' -57.5 NC_004684.1 + 42177 0.72 0.274945
Target:  5'- -cGCCGCACuGCGCggugaGCAGUGggccgUGGAg -3'
miRNA:   3'- aaCGGCGUG-CGCGg----CGUCAUa----ACCUg -5'
19251 5' -57.5 NC_004684.1 + 59122 0.71 0.311287
Target:  5'- -cGCCGCAgguCGCGgCGCAcGUGgcgGGACu -3'
miRNA:   3'- aaCGGCGU---GCGCgGCGU-CAUaa-CCUG- -5'
19251 5' -57.5 NC_004684.1 + 31480 0.71 0.318204
Target:  5'- -cGCUGCugGUGCCggagcccacguauGCAGUGUcggGGACc -3'
miRNA:   3'- aaCGGCGugCGCGG-------------CGUCAUAa--CCUG- -5'
19251 5' -57.5 NC_004684.1 + 64804 0.7 0.342907
Target:  5'- -cGCCGUugGUGCUGUcgAGUucgUGGGCc -3'
miRNA:   3'- aaCGGCGugCGCGGCG--UCAua-ACCUG- -5'
19251 5' -57.5 NC_004684.1 + 4459 0.69 0.412832
Target:  5'- -gGCCGCACGUGCgCGCgAGgccgucGUUGGcCg -3'
miRNA:   3'- aaCGGCGUGCGCG-GCG-UCa-----UAACCuG- -5'
19251 5' -57.5 NC_004684.1 + 3512 0.69 0.422173
Target:  5'- -cGCCGCAauCGCCGaCGGg--UGGGCc -3'
miRNA:   3'- aaCGGCGUgcGCGGC-GUCauaACCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.