miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19251 5' -57.5 NC_004684.1 + 450 0.68 0.490897
Target:  5'- -cGCUGCGCGCaUCGUGGccgUGGACa -3'
miRNA:   3'- aaCGGCGUGCGcGGCGUCauaACCUG- -5'
19251 5' -57.5 NC_004684.1 + 1767 0.67 0.521912
Target:  5'- -aGCUGCGCGCGUgGC-----UGGACg -3'
miRNA:   3'- aaCGGCGUGCGCGgCGucauaACCUG- -5'
19251 5' -57.5 NC_004684.1 + 2412 0.67 0.511484
Target:  5'- -aGCCGCAgaccCGCGUCGCGGUcaucGACc -3'
miRNA:   3'- aaCGGCGU----GCGCGGCGUCAuaacCUG- -5'
19251 5' -57.5 NC_004684.1 + 2734 0.67 0.553657
Target:  5'- gUGCCGCuGCGCGCCgacaucGCGGUGcgccacGACg -3'
miRNA:   3'- aACGGCG-UGCGCGG------CGUCAUaac---CUG- -5'
19251 5' -57.5 NC_004684.1 + 3512 0.69 0.422173
Target:  5'- -cGCCGCAauCGCCGaCGGg--UGGGCc -3'
miRNA:   3'- aaCGGCGUgcGCGGC-GUCauaACCUG- -5'
19251 5' -57.5 NC_004684.1 + 3813 0.66 0.596802
Target:  5'- -cGCCGCGC-CG-CGCAGgccgaUGGACc -3'
miRNA:   3'- aaCGGCGUGcGCgGCGUCaua--ACCUG- -5'
19251 5' -57.5 NC_004684.1 + 4459 0.69 0.412832
Target:  5'- -gGCCGCACGUGCgCGCgAGgccgucGUUGGcCg -3'
miRNA:   3'- aaCGGCGUGCGCG-GCG-UCa-----UAACCuG- -5'
19251 5' -57.5 NC_004684.1 + 7445 0.66 0.584868
Target:  5'- -cGCCGCcagcacaACGCGCaCGUGGggccGGACa -3'
miRNA:   3'- aaCGGCG-------UGCGCG-GCGUCauaaCCUG- -5'
19251 5' -57.5 NC_004684.1 + 7517 0.67 0.557935
Target:  5'- -cGCCGCGCGCGUgacccgacugaucaaCuucgacGCGGUGcUGGACc -3'
miRNA:   3'- aaCGGCGUGCGCG---------------G------CGUCAUaACCUG- -5'
19251 5' -57.5 NC_004684.1 + 7850 0.66 0.607683
Target:  5'- --aCgGCGCGCGCUGgCGGUGcaGGACc -3'
miRNA:   3'- aacGgCGUGCGCGGC-GUCAUaaCCUG- -5'
19251 5' -57.5 NC_004684.1 + 7913 0.72 0.274945
Target:  5'- -gGCCGCugGC-CgCGCAGguggUGGACa -3'
miRNA:   3'- aaCGGCGugCGcG-GCGUCaua-ACCUG- -5'
19251 5' -57.5 NC_004684.1 + 12500 0.68 0.490897
Target:  5'- -gGCCGCcuCGUGCCGCAcguuGUGcaGGGCc -3'
miRNA:   3'- aaCGGCGu-GCGCGGCGU----CAUaaCCUG- -5'
19251 5' -57.5 NC_004684.1 + 12795 0.67 0.511484
Target:  5'- -cGCgCGCACGCGCgCGCgauAGUAccUGGGa -3'
miRNA:   3'- aaCG-GCGUGCGCG-GCG---UCAUa-ACCUg -5'
19251 5' -57.5 NC_004684.1 + 16516 0.84 0.038348
Target:  5'- gUGCCGUAUGCGCCGCAGUccUGGGg -3'
miRNA:   3'- aACGGCGUGCGCGGCGUCAuaACCUg -5'
19251 5' -57.5 NC_004684.1 + 17692 0.7 0.376778
Target:  5'- -cGCCgaGCGCGUGCC-CGGUGcccUGGACa -3'
miRNA:   3'- aaCGG--CGUGCGCGGcGUCAUa--ACCUG- -5'
19251 5' -57.5 NC_004684.1 + 17792 0.67 0.543004
Target:  5'- -aGCCGCaACGaCGCCuGCGgGUGUgaggucUGGACc -3'
miRNA:   3'- aaCGGCG-UGC-GCGG-CGU-CAUA------ACCUG- -5'
19251 5' -57.5 NC_004684.1 + 17888 0.68 0.47873
Target:  5'- -gGCCGCuacacccccgACGCGCCGCugcacaucUGGACc -3'
miRNA:   3'- aaCGGCG----------UGCGCGGCGucaua---ACCUG- -5'
19251 5' -57.5 NC_004684.1 + 18135 0.66 0.575137
Target:  5'- -cGCCaacauGgACGCGCCGCuGUGggGcGACg -3'
miRNA:   3'- aaCGG-----CgUGCGCGGCGuCAUaaC-CUG- -5'
19251 5' -57.5 NC_004684.1 + 20636 0.68 0.490897
Target:  5'- -cGCCGCcUGCGuCCGCAcgc-UGGACa -3'
miRNA:   3'- aaCGGCGuGCGC-GGCGUcauaACCUG- -5'
19251 5' -57.5 NC_004684.1 + 22157 0.67 0.52926
Target:  5'- cUGCCGgGCcugaccagcaccaaGCGCCGCA----UGGACg -3'
miRNA:   3'- aACGGCgUG--------------CGCGGCGUcauaACCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.