miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19252 3' -60.5 NC_004684.1 + 61442 0.66 0.484028
Target:  5'- cACCGGcGcgGcCAGGuuggaccgccCGGUGGCCAGCGc -3'
miRNA:   3'- -UGGCC-Ca-C-GUCCu---------GCCACUGGUCGUa -5'
19252 3' -60.5 NC_004684.1 + 14088 0.66 0.484028
Target:  5'- gACCaGGGUGacCGGGugGuGUGGCuCAGCc- -3'
miRNA:   3'- -UGG-CCCAC--GUCCugC-CACUG-GUCGua -5'
19252 3' -60.5 NC_004684.1 + 17454 0.66 0.478132
Target:  5'- uCCGGGUGCccGACGGUGuggaguugccguccaACCugGGCGc -3'
miRNA:   3'- uGGCCCACGucCUGCCAC---------------UGG--UCGUa -5'
19252 3' -60.5 NC_004684.1 + 33880 0.66 0.464514
Target:  5'- uACCaggcGGUGCGGG-CGGUG-CCGGUg- -3'
miRNA:   3'- -UGGc---CCACGUCCuGCCACuGGUCGua -5'
19252 3' -60.5 NC_004684.1 + 7428 0.66 0.454912
Target:  5'- uCCGGGUGCGGcACGaGcGccGCCAGCAc -3'
miRNA:   3'- uGGCCCACGUCcUGC-CaC--UGGUCGUa -5'
19252 3' -60.5 NC_004684.1 + 4787 0.66 0.454912
Target:  5'- uCCgGGGUGCGcGACGccaUGACCGGCGc -3'
miRNA:   3'- uGG-CCCACGUcCUGCc--ACUGGUCGUa -5'
19252 3' -60.5 NC_004684.1 + 63333 0.66 0.445418
Target:  5'- aACCGGGaGguGGucucccCGGUGACCgcccAGCGc -3'
miRNA:   3'- -UGGCCCaCguCCu-----GCCACUGG----UCGUa -5'
19252 3' -60.5 NC_004684.1 + 38833 0.66 0.445418
Target:  5'- cACCGGuG-GCGGGGuguUGGUGACC-GCGa -3'
miRNA:   3'- -UGGCC-CaCGUCCU---GCCACUGGuCGUa -5'
19252 3' -60.5 NC_004684.1 + 5893 0.66 0.436036
Target:  5'- gACCGGGUgGCGGcGGCGcUGAUCGcGCAc -3'
miRNA:   3'- -UGGCCCA-CGUC-CUGCcACUGGU-CGUa -5'
19252 3' -60.5 NC_004684.1 + 60262 0.66 0.436036
Target:  5'- uCCGGGUGUAccucGGCGGUGGCgGuuGCGUg -3'
miRNA:   3'- uGGCCCACGUc---CUGCCACUGgU--CGUA- -5'
19252 3' -60.5 NC_004684.1 + 3047 0.66 0.436036
Target:  5'- gACCGGGUucaAGGACG-UGACCAaGCu- -3'
miRNA:   3'- -UGGCCCAcg-UCCUGCcACUGGU-CGua -5'
19252 3' -60.5 NC_004684.1 + 57209 0.66 0.435105
Target:  5'- cGCUGGGcgGUcuggaacuccucgAGcGCGGUGGCCAGCGg -3'
miRNA:   3'- -UGGCCCa-CG-------------UCcUGCCACUGGUCGUa -5'
19252 3' -60.5 NC_004684.1 + 3655 0.66 0.435105
Target:  5'- cGCCcGGUGcCGGGucaucguACGGUGGcCCGGCAc -3'
miRNA:   3'- -UGGcCCAC-GUCC-------UGCCACU-GGUCGUa -5'
19252 3' -60.5 NC_004684.1 + 62352 0.67 0.42677
Target:  5'- cGCCGGGUGCcaGACgcguGGUGGCCAcCGUu -3'
miRNA:   3'- -UGGCCCACGucCUG----CCACUGGUcGUA- -5'
19252 3' -60.5 NC_004684.1 + 48973 0.67 0.42677
Target:  5'- gGCCGGG-GCGGGcgcguCGGUGcCCuGCu- -3'
miRNA:   3'- -UGGCCCaCGUCCu----GCCACuGGuCGua -5'
19252 3' -60.5 NC_004684.1 + 2620 0.67 0.417621
Target:  5'- uCUGGaaGCAGG-CGGUGGCCAacGCAUg -3'
miRNA:   3'- uGGCCcaCGUCCuGCCACUGGU--CGUA- -5'
19252 3' -60.5 NC_004684.1 + 9016 0.67 0.417621
Target:  5'- cGCgCGGugccGUGCGGGGCGGcaACCGGCGc -3'
miRNA:   3'- -UG-GCC----CACGUCCUGCCacUGGUCGUa -5'
19252 3' -60.5 NC_004684.1 + 44570 0.67 0.408592
Target:  5'- gAUCGGGUcagGCAGGACGuaGUGGCCAu--- -3'
miRNA:   3'- -UGGCCCA---CGUCCUGC--CACUGGUcgua -5'
19252 3' -60.5 NC_004684.1 + 66370 0.67 0.408592
Target:  5'- gACgCGGGUGUuGGG-GGUGAaguCCGGCAUg -3'
miRNA:   3'- -UG-GCCCACGuCCUgCCACU---GGUCGUA- -5'
19252 3' -60.5 NC_004684.1 + 64356 0.67 0.399686
Target:  5'- cCCGGGccucguugUGCGGccccuCGGUGAUCAGCAc -3'
miRNA:   3'- uGGCCC--------ACGUCcu---GCCACUGGUCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.