miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19252 5' -61.2 NC_004684.1 + 44236 0.68 0.371301
Target:  5'- aGCAGGC---UCUCgccaaaguugGCCGcCGCCCGGa- -3'
miRNA:   3'- -CGUCCGacuAGAG----------CGGC-GCGGGCCac -5'
19252 5' -61.2 NC_004684.1 + 66460 0.68 0.354985
Target:  5'- gGCGGcGUUG-UCUccaCGCCGCcaCCCGGUGg -3'
miRNA:   3'- -CGUC-CGACuAGA---GCGGCGc-GGGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 55551 0.68 0.347019
Target:  5'- cGCGccGCUGG-C-CGCCGUgGCCCGGUGg -3'
miRNA:   3'- -CGUc-CGACUaGaGCGGCG-CGGGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 10138 0.68 0.347019
Target:  5'- uGCGGGCcGAcggUGCCGCccGCCCaGGUGg -3'
miRNA:   3'- -CGUCCGaCUagaGCGGCG--CGGG-CCAC- -5'
19252 5' -61.2 NC_004684.1 + 3694 0.68 0.339181
Target:  5'- gGCAGGa-GAUCgccagcgcCGCCGCGCuggCCGGUa -3'
miRNA:   3'- -CGUCCgaCUAGa-------GCGGCGCG---GGCCAc -5'
19252 5' -61.2 NC_004684.1 + 64012 0.69 0.309126
Target:  5'- cCAGGCg---CUUGCCGCGCUugaccuCGGUGu -3'
miRNA:   3'- cGUCCGacuaGAGCGGCGCGG------GCCAC- -5'
19252 5' -61.2 NC_004684.1 + 29668 0.69 0.301937
Target:  5'- aGCAGGCgcuccacCUCGCCggGCGCaaGGUGg -3'
miRNA:   3'- -CGUCCGacua---GAGCGG--CGCGggCCAC- -5'
19252 5' -61.2 NC_004684.1 + 67136 0.69 0.300515
Target:  5'- cGCAGGCUGuuggcgaucagCUCGguguuaCCGCGCCgGGg- -3'
miRNA:   3'- -CGUCCGACua---------GAGC------GGCGCGGgCCac -5'
19252 5' -61.2 NC_004684.1 + 49946 0.69 0.294878
Target:  5'- aCGGuGUUGAgCUUGUCGCGCUCGGUc -3'
miRNA:   3'- cGUC-CGACUaGAGCGGCGCGGGCCAc -5'
19252 5' -61.2 NC_004684.1 + 31337 0.69 0.294878
Target:  5'- uCGGGCUGAUC-Cag-GUGCCCGGUGu -3'
miRNA:   3'- cGUCCGACUAGaGcggCGCGGGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 7880 0.69 0.287947
Target:  5'- cGCAGGC----CUaCGaCGCGCCCGGUGc -3'
miRNA:   3'- -CGUCCGacuaGA-GCgGCGCGGGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 67192 0.7 0.281146
Target:  5'- uGCGGGUcacGGUCUCGCCGUucgGCaggucaaCGGUGa -3'
miRNA:   3'- -CGUCCGa--CUAGAGCGGCG---CGg------GCCAC- -5'
19252 5' -61.2 NC_004684.1 + 2303 0.7 0.281146
Target:  5'- cGCGGuGCUGA-C-CGCCGUGCacguCGGUGa -3'
miRNA:   3'- -CGUC-CGACUaGaGCGGCGCGg---GCCAC- -5'
19252 5' -61.2 NC_004684.1 + 58320 0.7 0.267926
Target:  5'- --cGGCgacgccgGGUCaUGgCGCGCCCGGUGg -3'
miRNA:   3'- cguCCGa------CUAGaGCgGCGCGGGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 12979 0.7 0.267926
Target:  5'- gGCAGGCaacaccGAg--CGCCGgGCCgGGUGg -3'
miRNA:   3'- -CGUCCGa-----CUagaGCGGCgCGGgCCAC- -5'
19252 5' -61.2 NC_004684.1 + 37051 0.7 0.25459
Target:  5'- cCAGGCuuUGAUCUCGUcaaacgaCGUGgCCGGUGc -3'
miRNA:   3'- cGUCCG--ACUAGAGCG-------GCGCgGGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 55313 0.71 0.242999
Target:  5'- cGCGGGCcagcacCUCGUCGCGCUCGGc- -3'
miRNA:   3'- -CGUCCGacua--GAGCGGCGCGGGCCac -5'
19252 5' -61.2 NC_004684.1 + 27390 0.71 0.229558
Target:  5'- cGCAGGCUGGUaa-GCCaccacaccgaccagGUGCCCGGa- -3'
miRNA:   3'- -CGUCCGACUAgagCGG--------------CGCGGGCCac -5'
19252 5' -61.2 NC_004684.1 + 36751 0.71 0.225594
Target:  5'- cCGGcGCUGA-CgccgccaggGCCGCGCCCGGUGc -3'
miRNA:   3'- cGUC-CGACUaGag-------CGGCGCGGGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 57914 0.71 0.220032
Target:  5'- gGUAcGGCUGcgCUUGCCcgccagcuccaGCGCCCGGa- -3'
miRNA:   3'- -CGU-CCGACuaGAGCGG-----------CGCGGGCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.