miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19252 5' -61.2 NC_004684.1 + 29668 0.69 0.301937
Target:  5'- aGCAGGCgcuccacCUCGCCggGCGCaaGGUGg -3'
miRNA:   3'- -CGUCCGacua---GAGCGG--CGCGggCCAC- -5'
19252 5' -61.2 NC_004684.1 + 30331 0.71 0.214587
Target:  5'- gGCAGGC-GAUCU-GCUGCGCCagcaGGUu -3'
miRNA:   3'- -CGUCCGaCUAGAgCGGCGCGGg---CCAc -5'
19252 5' -61.2 NC_004684.1 + 31337 0.69 0.294878
Target:  5'- uCGGGCUGAUC-Cag-GUGCCCGGUGu -3'
miRNA:   3'- cGUCCGACUAGaGcggCGCGGGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 34189 0.67 0.405433
Target:  5'- cCGGGCUG-UC-CGUCGCcaugGCCaCGGUGa -3'
miRNA:   3'- cGUCCGACuAGaGCGGCG----CGG-GCCAC- -5'
19252 5' -61.2 NC_004684.1 + 36292 0.68 0.371301
Target:  5'- -gAGGCggUGcUCUCGCUGUccaCCCGGUGg -3'
miRNA:   3'- cgUCCG--ACuAGAGCGGCGc--GGGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 36751 0.71 0.225594
Target:  5'- cCGGcGCUGA-CgccgccaggGCCGCGCCCGGUGc -3'
miRNA:   3'- cGUC-CGACUaGag-------CGGCGCGGGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 37051 0.7 0.25459
Target:  5'- cCAGGCuuUGAUCUCGUcaaacgaCGUGgCCGGUGc -3'
miRNA:   3'- cGUCCG--ACUAGAGCG-------GCGCgGGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 38816 0.66 0.441474
Target:  5'- gGCAGGCag--C-CGCCGCaCaCCGGUGg -3'
miRNA:   3'- -CGUCCGacuaGaGCGGCGcG-GGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 39140 0.66 0.479262
Target:  5'- cCAGGCUGGccgggUCcaccgCGCUGUGCuCCgGGUGg -3'
miRNA:   3'- cGUCCGACU-----AGa----GCGGCGCG-GG-CCAC- -5'
19252 5' -61.2 NC_004684.1 + 39226 0.66 0.432293
Target:  5'- cGCucGCUGAUCUUG-CGCGCCgaCGGg- -3'
miRNA:   3'- -CGucCGACUAGAGCgGCGCGG--GCCac -5'
19252 5' -61.2 NC_004684.1 + 40384 0.71 0.214587
Target:  5'- uGCcuGGCUGuugaUCGCCGCGCCCGc-- -3'
miRNA:   3'- -CGu-CCGACuag-AGCGGCGCGGGCcac -5'
19252 5' -61.2 NC_004684.1 + 42087 0.66 0.469663
Target:  5'- -aGGGCcGA-CgaacCGCCGcCGCCUGGUGu -3'
miRNA:   3'- cgUCCGaCUaGa---GCGGC-GCGGGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 42155 0.66 0.469663
Target:  5'- cGCAcGGCcuaugGGUCgagagCGCCGCacuGCgCGGUGa -3'
miRNA:   3'- -CGU-CCGa----CUAGa----GCGGCG---CGgGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 42523 0.66 0.479262
Target:  5'- gGCGcGGCuUGAUgggggUGCCGaacgGCCCGGUGg -3'
miRNA:   3'- -CGU-CCG-ACUAga---GCGGCg---CGGGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 43877 0.66 0.441474
Target:  5'- aGCAGGCUGGUgaCGCCggacaGCGUcuuccaggCCGGa- -3'
miRNA:   3'- -CGUCCGACUAgaGCGG-----CGCG--------GGCCac -5'
19252 5' -61.2 NC_004684.1 + 44236 0.68 0.371301
Target:  5'- aGCAGGC---UCUCgccaaaguugGCCGcCGCCCGGa- -3'
miRNA:   3'- -CGUCCGacuAGAG----------CGGC-GCGGGCCac -5'
19252 5' -61.2 NC_004684.1 + 44942 0.74 0.142176
Target:  5'- cGCGGGCggGAUCgcCGCCGCGCCgaCGGc- -3'
miRNA:   3'- -CGUCCGa-CUAGa-GCGGCGCGG--GCCac -5'
19252 5' -61.2 NC_004684.1 + 45258 0.67 0.414269
Target:  5'- cCAGcGCUGGUCgcgGCCcuuGCGUCCGGUu -3'
miRNA:   3'- cGUC-CGACUAGag-CGG---CGCGGGCCAc -5'
19252 5' -61.2 NC_004684.1 + 46773 0.67 0.396716
Target:  5'- cGCuGGCg---CUCGCCgGUGCCCaGGUa -3'
miRNA:   3'- -CGuCCGacuaGAGCGG-CGCGGG-CCAc -5'
19252 5' -61.2 NC_004684.1 + 47604 0.67 0.379648
Target:  5'- aGCAGGCccgccAUCUUGUCGCcCCCGGc- -3'
miRNA:   3'- -CGUCCGac---UAGAGCGGCGcGGGCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.