miRNA display CGI


Results 1 - 20 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19252 5' -61.2 NC_004684.1 + 2303 0.7 0.281146
Target:  5'- cGCGGuGCUGA-C-CGCCGUGCacguCGGUGa -3'
miRNA:   3'- -CGUC-CGACUaGaGCGGCGCGg---GCCAC- -5'
19252 5' -61.2 NC_004684.1 + 3694 0.68 0.339181
Target:  5'- gGCAGGa-GAUCgccagcgcCGCCGCGCuggCCGGUa -3'
miRNA:   3'- -CGUCCgaCUAGa-------GCGGCGCG---GGCCAc -5'
19252 5' -61.2 NC_004684.1 + 5046 0.66 0.469663
Target:  5'- cGCAGGCUGG-CgcgCGCUGUGCuggaggccuCCGGc- -3'
miRNA:   3'- -CGUCCGACUaGa--GCGGCGCG---------GGCCac -5'
19252 5' -61.2 NC_004684.1 + 5945 0.66 0.460163
Target:  5'- cCGGGC-GGUCcaaccUgGCCGCGCC-GGUGa -3'
miRNA:   3'- cGUCCGaCUAG-----AgCGGCGCGGgCCAC- -5'
19252 5' -61.2 NC_004684.1 + 7582 0.66 0.460163
Target:  5'- uGC-GGCUGGUg-CGCgGCaaCCCGGUGg -3'
miRNA:   3'- -CGuCCGACUAgaGCGgCGc-GGGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 7880 0.69 0.287947
Target:  5'- cGCAGGC----CUaCGaCGCGCCCGGUGc -3'
miRNA:   3'- -CGUCCGacuaGA-GCgGCGCGGGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 8724 0.78 0.072636
Target:  5'- gGCGGcGCUGAUCccgauguucgcCGCCGCGCCCGGc- -3'
miRNA:   3'- -CGUC-CGACUAGa----------GCGGCGCGGGCCac -5'
19252 5' -61.2 NC_004684.1 + 9711 0.66 0.432293
Target:  5'- gGCgAGGUguccUGAUgUgGCCGCuaCCCGGUGa -3'
miRNA:   3'- -CG-UCCG----ACUAgAgCGGCGc-GGGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 10138 0.68 0.347019
Target:  5'- uGCGGGCcGAcggUGCCGCccGCCCaGGUGg -3'
miRNA:   3'- -CGUCCGaCUagaGCGGCG--CGGG-CCAC- -5'
19252 5' -61.2 NC_004684.1 + 10180 0.67 0.379648
Target:  5'- gGCAGGCUGAgcaccaUCgCGCCGCcgccuuccagGCCCGc-- -3'
miRNA:   3'- -CGUCCGACU------AGaGCGGCG----------CGGGCcac -5'
19252 5' -61.2 NC_004684.1 + 11164 0.66 0.479262
Target:  5'- cGCAGGCUGAcCgccugcaugCGCCGCuCCCa--- -3'
miRNA:   3'- -CGUCCGACUaGa--------GCGGCGcGGGccac -5'
19252 5' -61.2 NC_004684.1 + 12979 0.7 0.267926
Target:  5'- gGCAGGCaacaccGAg--CGCCGgGCCgGGUGg -3'
miRNA:   3'- -CGUCCGa-----CUagaGCGGCgCGGgCCAC- -5'
19252 5' -61.2 NC_004684.1 + 16020 0.66 0.450765
Target:  5'- cGguGGCgUGGUCgUUGaCGUGCCCGGc- -3'
miRNA:   3'- -CguCCG-ACUAG-AGCgGCGCGGGCCac -5'
19252 5' -61.2 NC_004684.1 + 19065 0.66 0.450765
Target:  5'- gGCAGGCUGGcgucCUCggaggugaggcaGUCGCaUCCGGUGg -3'
miRNA:   3'- -CGUCCGACUa---GAG------------CGGCGcGGGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 22528 0.77 0.090299
Target:  5'- cGCAGGCaGGcCUCGCUcUGCCCGGUGu -3'
miRNA:   3'- -CGUCCGaCUaGAGCGGcGCGGGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 22781 0.67 0.379648
Target:  5'- --cGGCg---CUC-CCGCGUCCGGUGa -3'
miRNA:   3'- cguCCGacuaGAGcGGCGCGGGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 25516 0.66 0.460163
Target:  5'- aGC-GGCUGuUCUCGaCCGCcgacGCCgGGUc -3'
miRNA:   3'- -CGuCCGACuAGAGC-GGCG----CGGgCCAc -5'
19252 5' -61.2 NC_004684.1 + 26421 0.72 0.189073
Target:  5'- cGCuGGCagcgGggUUCGCCGCcggugGCCCGGUGu -3'
miRNA:   3'- -CGuCCGa---CuaGAGCGGCG-----CGGGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 27284 0.66 0.476372
Target:  5'- cCGGGCUGAUCagcacccuguucggUgGCC-UGCUCGGUGc -3'
miRNA:   3'- cGUCCGACUAG--------------AgCGGcGCGGGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 27390 0.71 0.229558
Target:  5'- cGCAGGCUGGUaa-GCCaccacaccgaccagGUGCCCGGa- -3'
miRNA:   3'- -CGUCCGACUAgagCGG--------------CGCGGGCCac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.