miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19252 5' -61.2 NC_004684.1 + 60527 1.09 0.000362
Target:  5'- cGCAGGCUGAUCUCGCCGCGCCCGGUGc -3'
miRNA:   3'- -CGUCCGACUAGAGCGGCGCGGGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 8724 0.78 0.072636
Target:  5'- gGCGGcGCUGAUCccgauguucgcCGCCGCGCCCGGc- -3'
miRNA:   3'- -CGUC-CGACUAGa----------GCGGCGCGGGCCac -5'
19252 5' -61.2 NC_004684.1 + 65757 0.77 0.081009
Target:  5'- cGCGGGCguUGG-C-CGCCGCGCgCCGGUGg -3'
miRNA:   3'- -CGUCCG--ACUaGaGCGGCGCG-GGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 22528 0.77 0.090299
Target:  5'- cGCAGGCaGGcCUCGCUcUGCCCGGUGu -3'
miRNA:   3'- -CGUCCGaCUaGAGCGGcGCGGGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 44942 0.74 0.142176
Target:  5'- cGCGGGCggGAUCgcCGCCGCGCCgaCGGc- -3'
miRNA:   3'- -CGUCCGa-CUAGa-GCGGCGCGG--GCCac -5'
19252 5' -61.2 NC_004684.1 + 26421 0.72 0.189073
Target:  5'- cGCuGGCagcgGggUUCGCCGCcggugGCCCGGUGu -3'
miRNA:   3'- -CGuCCGa---CuaGAGCGGCG-----CGGGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 52258 0.72 0.204044
Target:  5'- cGCuGGCgugGAUCagGCCcaGCGuCCCGGUGa -3'
miRNA:   3'- -CGuCCGa--CUAGagCGG--CGC-GGGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 53248 0.71 0.214587
Target:  5'- gGUAGG-UGAUCcCGgCGCGCuCCGGUGu -3'
miRNA:   3'- -CGUCCgACUAGaGCgGCGCG-GGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 30331 0.71 0.214587
Target:  5'- gGCAGGC-GAUCU-GCUGCGCCagcaGGUu -3'
miRNA:   3'- -CGUCCGaCUAGAgCGGCGCGGg---CCAc -5'
19252 5' -61.2 NC_004684.1 + 40384 0.71 0.214587
Target:  5'- uGCcuGGCUGuugaUCGCCGCGCCCGc-- -3'
miRNA:   3'- -CGu-CCGACuag-AGCGGCGCGGGCcac -5'
19252 5' -61.2 NC_004684.1 + 57914 0.71 0.220032
Target:  5'- gGUAcGGCUGcgCUUGCCcgccagcuccaGCGCCCGGa- -3'
miRNA:   3'- -CGU-CCGACuaGAGCGG-----------CGCGGGCCac -5'
19252 5' -61.2 NC_004684.1 + 36751 0.71 0.225594
Target:  5'- cCGGcGCUGA-CgccgccaggGCCGCGCCCGGUGc -3'
miRNA:   3'- cGUC-CGACUaGag-------CGGCGCGGGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 27390 0.71 0.229558
Target:  5'- cGCAGGCUGGUaa-GCCaccacaccgaccagGUGCCCGGa- -3'
miRNA:   3'- -CGUCCGACUAgagCGG--------------CGCGGGCCac -5'
19252 5' -61.2 NC_004684.1 + 55313 0.71 0.242999
Target:  5'- cGCGGGCcagcacCUCGUCGCGCUCGGc- -3'
miRNA:   3'- -CGUCCGacua--GAGCGGCGCGGGCCac -5'
19252 5' -61.2 NC_004684.1 + 37051 0.7 0.25459
Target:  5'- cCAGGCuuUGAUCUCGUcaaacgaCGUGgCCGGUGc -3'
miRNA:   3'- cGUCCG--ACUAGAGCG-------GCGCgGGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 58320 0.7 0.267926
Target:  5'- --cGGCgacgccgGGUCaUGgCGCGCCCGGUGg -3'
miRNA:   3'- cguCCGa------CUAGaGCgGCGCGGGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 12979 0.7 0.267926
Target:  5'- gGCAGGCaacaccGAg--CGCCGgGCCgGGUGg -3'
miRNA:   3'- -CGUCCGa-----CUagaGCGGCgCGGgCCAC- -5'
19252 5' -61.2 NC_004684.1 + 2303 0.7 0.281146
Target:  5'- cGCGGuGCUGA-C-CGCCGUGCacguCGGUGa -3'
miRNA:   3'- -CGUC-CGACUaGaGCGGCGCGg---GCCAC- -5'
19252 5' -61.2 NC_004684.1 + 67192 0.7 0.281146
Target:  5'- uGCGGGUcacGGUCUCGCCGUucgGCaggucaaCGGUGa -3'
miRNA:   3'- -CGUCCGa--CUAGAGCGGCG---CGg------GCCAC- -5'
19252 5' -61.2 NC_004684.1 + 7880 0.69 0.287947
Target:  5'- cGCAGGC----CUaCGaCGCGCCCGGUGc -3'
miRNA:   3'- -CGUCCGacuaGA-GCgGCGCGGGCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.