miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19252 5' -61.2 NC_004684.1 + 60578 0.67 0.423223
Target:  5'- aGCuGGUauGUCUccaCGCCGCGCaCGGUGc -3'
miRNA:   3'- -CGuCCGacUAGA---GCGGCGCGgGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 3694 0.68 0.339181
Target:  5'- gGCAGGa-GAUCgccagcgcCGCCGCGCuggCCGGUa -3'
miRNA:   3'- -CGUCCgaCUAGa-------GCGGCGCG---GGCCAc -5'
19252 5' -61.2 NC_004684.1 + 55551 0.68 0.347019
Target:  5'- cGCGccGCUGG-C-CGCCGUgGCCCGGUGg -3'
miRNA:   3'- -CGUc-CGACUaGaGCGGCG-CGGGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 66460 0.68 0.354985
Target:  5'- gGCGGcGUUG-UCUccaCGCCGCcaCCCGGUGg -3'
miRNA:   3'- -CGUC-CGACuAGA---GCGGCGc-GGGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 36292 0.68 0.371301
Target:  5'- -gAGGCggUGcUCUCGCUGUccaCCCGGUGg -3'
miRNA:   3'- cgUCCG--ACuAGAGCGGCGc--GGGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 55381 0.67 0.378808
Target:  5'- aGCuGGCccgGAUCgcgccggaaaccuUCGCUGCGCUggCGGUGg -3'
miRNA:   3'- -CGuCCGa--CUAG-------------AGCGGCGCGG--GCCAC- -5'
19252 5' -61.2 NC_004684.1 + 62246 0.67 0.379648
Target:  5'- aGCGcGGCUGGUCcUGCC-CGCUcaugCGGUGg -3'
miRNA:   3'- -CGU-CCGACUAGaGCGGcGCGG----GCCAC- -5'
19252 5' -61.2 NC_004684.1 + 61929 0.67 0.383022
Target:  5'- uGCGGGCcacggcaccCGCCGgGCCUGGUGc -3'
miRNA:   3'- -CGUCCGacuaga---GCGGCgCGGGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 45258 0.67 0.414269
Target:  5'- cCAGcGCUGGUCgcgGCCcuuGCGUCCGGUu -3'
miRNA:   3'- cGUC-CGACUAGag-CGG---CGCGGGCCAc -5'
19252 5' -61.2 NC_004684.1 + 64012 0.69 0.309126
Target:  5'- cCAGGCg---CUUGCCGCGCUugaccuCGGUGu -3'
miRNA:   3'- cGUCCGacuaGAGCGGCGCGG------GCCAC- -5'
19252 5' -61.2 NC_004684.1 + 67192 0.7 0.281146
Target:  5'- uGCGGGUcacGGUCUCGCCGUucgGCaggucaaCGGUGa -3'
miRNA:   3'- -CGUCCGa--CUAGAGCGGCG---CGg------GCCAC- -5'
19252 5' -61.2 NC_004684.1 + 2303 0.7 0.281146
Target:  5'- cGCGGuGCUGA-C-CGCCGUGCacguCGGUGa -3'
miRNA:   3'- -CGUC-CGACUaGaGCGGCGCGg---GCCAC- -5'
19252 5' -61.2 NC_004684.1 + 8724 0.78 0.072636
Target:  5'- gGCGGcGCUGAUCccgauguucgcCGCCGCGCCCGGc- -3'
miRNA:   3'- -CGUC-CGACUAGa----------GCGGCGCGGGCCac -5'
19252 5' -61.2 NC_004684.1 + 65757 0.77 0.081009
Target:  5'- cGCGGGCguUGG-C-CGCCGCGCgCCGGUGg -3'
miRNA:   3'- -CGUCCG--ACUaGaGCGGCGCG-GGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 22528 0.77 0.090299
Target:  5'- cGCAGGCaGGcCUCGCUcUGCCCGGUGu -3'
miRNA:   3'- -CGUCCGaCUaGAGCGGcGCGGGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 26421 0.72 0.189073
Target:  5'- cGCuGGCagcgGggUUCGCCGCcggugGCCCGGUGu -3'
miRNA:   3'- -CGuCCGa---CuaGAGCGGCG-----CGGGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 53248 0.71 0.214587
Target:  5'- gGUAGG-UGAUCcCGgCGCGCuCCGGUGu -3'
miRNA:   3'- -CGUCCgACUAGaGCgGCGCG-GGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 36751 0.71 0.225594
Target:  5'- cCGGcGCUGA-CgccgccaggGCCGCGCCCGGUGc -3'
miRNA:   3'- cGUC-CGACUaGag-------CGGCGCGGGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 12979 0.7 0.267926
Target:  5'- gGCAGGCaacaccGAg--CGCCGgGCCgGGUGg -3'
miRNA:   3'- -CGUCCGa-----CUagaGCGGCgCGGgCCAC- -5'
19252 5' -61.2 NC_004684.1 + 58320 0.7 0.267926
Target:  5'- --cGGCgacgccgGGUCaUGgCGCGCCCGGUGg -3'
miRNA:   3'- cguCCGa------CUAGaGCgGCGCGGGCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.