Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19253 | 5' | -54.2 | NC_004684.1 | + | 57535 | 0.66 | 0.867041 |
Target: 5'- gGGAUccgGCGGcaGCUCACCGgcggCGGUGaUCGa -3' miRNA: 3'- -CCUG---UGCC--UGAGUGGCa---GCUACaGGU- -5' |
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19253 | 5' | -54.2 | NC_004684.1 | + | 11508 | 0.66 | 0.867041 |
Target: 5'- -uGCugGGACUCccggcACCGcUCGGUGggCCu -3' miRNA: 3'- ccUGugCCUGAG-----UGGC-AGCUACa-GGu -5' |
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19253 | 5' | -54.2 | NC_004684.1 | + | 21460 | 0.66 | 0.867041 |
Target: 5'- aGGACACcccGAC-CACCGaCGAggUGUUCAa -3' miRNA: 3'- -CCUGUGc--CUGaGUGGCaGCU--ACAGGU- -5' |
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19253 | 5' | -54.2 | NC_004684.1 | + | 15026 | 0.66 | 0.867041 |
Target: 5'- cGGCugGGACggCACCaucgaGUCGGUGcugcuggaUCCGa -3' miRNA: 3'- cCUGugCCUGa-GUGG-----CAGCUAC--------AGGU- -5' |
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19253 | 5' | -54.2 | NC_004684.1 | + | 49707 | 0.66 | 0.850863 |
Target: 5'- cGGGCACGcGCUCGgCGgcgCGgcGUUCAa -3' miRNA: 3'- -CCUGUGCcUGAGUgGCa--GCuaCAGGU- -5' |
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19253 | 5' | -54.2 | NC_004684.1 | + | 41490 | 0.66 | 0.850863 |
Target: 5'- aGGugAUGGACa-ACCG--GGUGUCCAu -3' miRNA: 3'- -CCugUGCCUGagUGGCagCUACAGGU- -5' |
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19253 | 5' | -54.2 | NC_004684.1 | + | 62172 | 0.66 | 0.84244 |
Target: 5'- cGGACACcauGGcCUCACCuggagcacgGUCGAgcgcGUCCu -3' miRNA: 3'- -CCUGUG---CCuGAGUGG---------CAGCUa---CAGGu -5' |
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19253 | 5' | -54.2 | NC_004684.1 | + | 34182 | 0.66 | 0.84244 |
Target: 5'- uGGGCcgcCGGGCUguCCGUCGccAUGgCCAc -3' miRNA: 3'- -CCUGu--GCCUGAguGGCAGC--UACaGGU- -5' |
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19253 | 5' | -54.2 | NC_004684.1 | + | 59450 | 0.66 | 0.84244 |
Target: 5'- -cAC-CGGugUgCGCCGgucggcggCGAUGUCCAc -3' miRNA: 3'- ccUGuGCCugA-GUGGCa-------GCUACAGGU- -5' |
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19253 | 5' | -54.2 | NC_004684.1 | + | 14744 | 0.66 | 0.84244 |
Target: 5'- aGGAUGCGGG---ACCGUCGcgGUUCc -3' miRNA: 3'- -CCUGUGCCUgagUGGCAGCuaCAGGu -5' |
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19253 | 5' | -54.2 | NC_004684.1 | + | 30697 | 0.67 | 0.819571 |
Target: 5'- cGACGuaccCGGACUCcgacccagucucgccGCCGUCGAUGgugguggCCu -3' miRNA: 3'- cCUGU----GCCUGAG---------------UGGCAGCUACa------GGu -5' |
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19253 | 5' | -54.2 | NC_004684.1 | + | 2300 | 0.67 | 0.815935 |
Target: 5'- cGACGCGGuGCUgACCGccgugcacgUCGGUGaCCAc -3' miRNA: 3'- cCUGUGCC-UGAgUGGC---------AGCUACaGGU- -5' |
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19253 | 5' | -54.2 | NC_004684.1 | + | 35447 | 0.67 | 0.797325 |
Target: 5'- cGGACAgCGGGCg-ACCGUUGcgG-CCGg -3' miRNA: 3'- -CCUGU-GCCUGagUGGCAGCuaCaGGU- -5' |
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19253 | 5' | -54.2 | NC_004684.1 | + | 59107 | 0.67 | 0.787767 |
Target: 5'- cGGCACcGGgUUGCCGUUGcUGUCCAg -3' miRNA: 3'- cCUGUGcCUgAGUGGCAGCuACAGGU- -5' |
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19253 | 5' | -54.2 | NC_004684.1 | + | 59905 | 0.68 | 0.768194 |
Target: 5'- cGGcGCACGaaccGGCccuugUCAgCGUCGGUGUCCGg -3' miRNA: 3'- -CC-UGUGC----CUG-----AGUgGCAGCUACAGGU- -5' |
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19253 | 5' | -54.2 | NC_004684.1 | + | 61954 | 0.68 | 0.748085 |
Target: 5'- uGGuGCAcCGGAUguaACCGUCGGUGUacaCCAu -3' miRNA: 3'- -CC-UGU-GCCUGag-UGGCAGCUACA---GGU- -5' |
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19253 | 5' | -54.2 | NC_004684.1 | + | 57912 | 0.68 | 0.748085 |
Target: 5'- aGGugGcCGGGCUgACCGcCGAUGacauugCCGa -3' miRNA: 3'- -CCugU-GCCUGAgUGGCaGCUACa-----GGU- -5' |
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19253 | 5' | -54.2 | NC_004684.1 | + | 49129 | 0.68 | 0.748085 |
Target: 5'- cGGC-CGGGCgugccgUUGCCGUCGAUGgcggCCAc -3' miRNA: 3'- cCUGuGCCUG------AGUGGCAGCUACa---GGU- -5' |
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19253 | 5' | -54.2 | NC_004684.1 | + | 18952 | 0.68 | 0.737855 |
Target: 5'- cGGCGCaGGAUgccagCGCggUGUCGAUGUCCu -3' miRNA: 3'- cCUGUG-CCUGa----GUG--GCAGCUACAGGu -5' |
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19253 | 5' | -54.2 | NC_004684.1 | + | 9867 | 0.68 | 0.737855 |
Target: 5'- uGGAgGCGGGC-CACCGccUCGGgaUCCGg -3' miRNA: 3'- -CCUgUGCCUGaGUGGC--AGCUacAGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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