miRNA display CGI


Results 41 - 60 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19254 5' -61.6 NC_004684.1 + 43856 0.66 0.44414
Target:  5'- cCGAUGCCGCCGa-GGUUGGugaGCaGGCUg -3'
miRNA:   3'- -GUUGCGGCGGUggCCAGCUg--CG-CCGA- -5'
19254 5' -61.6 NC_004684.1 + 21571 0.66 0.44414
Target:  5'- cCGAgGCCGUCACCgGGUCaAUGCcGCa -3'
miRNA:   3'- -GUUgCGGCGGUGG-CCAGcUGCGcCGa -5'
19254 5' -61.6 NC_004684.1 + 11818 0.66 0.44414
Target:  5'- uUggUGCCuggacccccgGCCACCGGgccacggCGGCcaGCGGCg -3'
miRNA:   3'- -GuuGCGG----------CGGUGGCCa------GCUG--CGCCGa -5'
19254 5' -61.6 NC_004684.1 + 49085 0.66 0.443222
Target:  5'- aCGuCGCCGCCaACCGGcaggugccacaggUCGcCGuCGGCg -3'
miRNA:   3'- -GUuGCGGCGG-UGGCC-------------AGCuGC-GCCGa -5'
19254 5' -61.6 NC_004684.1 + 19928 0.66 0.443222
Target:  5'- --gUGCCGCCGCUGGUagCGACuaccucaGCGaGCg -3'
miRNA:   3'- guuGCGGCGGUGGCCA--GCUG-------CGC-CGa -5'
19254 5' -61.6 NC_004684.1 + 62355 0.66 0.435002
Target:  5'- -cGCGCCaGCCugCGcaccucGUCGuCGCGGUc -3'
miRNA:   3'- guUGCGG-CGGugGC------CAGCuGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 2518 0.66 0.435002
Target:  5'- aCGACGCCcgGCaCugCGGaCGcUGCGGCa -3'
miRNA:   3'- -GUUGCGG--CG-GugGCCaGCuGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 10684 0.66 0.435002
Target:  5'- gAACGCC-UCAaCGGUCggGACGCGGUg -3'
miRNA:   3'- gUUGCGGcGGUgGCCAG--CUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 44185 0.66 0.435002
Target:  5'- --cCGUCGCCACCGG-CGGCcuUGGUg -3'
miRNA:   3'- guuGCGGCGGUGGCCaGCUGc-GCCGa -5'
19254 5' -61.6 NC_004684.1 + 37501 0.66 0.434094
Target:  5'- aCGAC-CCGCCAcCCGGUuacgaCGACcugaugcacgacuGCGGCg -3'
miRNA:   3'- -GUUGcGGCGGU-GGCCA-----GCUG-------------CGCCGa -5'
19254 5' -61.6 NC_004684.1 + 57955 0.67 0.425973
Target:  5'- cCAGgGCCuCCACCauGGcCGucuCGCGGCUg -3'
miRNA:   3'- -GUUgCGGcGGUGG--CCaGCu--GCGCCGA- -5'
19254 5' -61.6 NC_004684.1 + 2469 0.67 0.425973
Target:  5'- uCAcCGCCGCCACCugGGUCGcCGCc--- -3'
miRNA:   3'- -GUuGCGGCGGUGG--CCAGCuGCGccga -5'
19254 5' -61.6 NC_004684.1 + 66647 0.67 0.425973
Target:  5'- gAGCGCCGCCAgggcgUCGGugUCGuCGgGGUa -3'
miRNA:   3'- gUUGCGGCGGU-----GGCC--AGCuGCgCCGa -5'
19254 5' -61.6 NC_004684.1 + 43415 0.67 0.425973
Target:  5'- --cCGCCGCCgaacccgagGCCcggcgaggccgaGGUCGGUGCGGCg -3'
miRNA:   3'- guuGCGGCGG---------UGG------------CCAGCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 26613 0.67 0.425973
Target:  5'- gCGGCGgCGUCAUCGccaacgacaccGUCGGCGCGGa- -3'
miRNA:   3'- -GUUGCgGCGGUGGC-----------CAGCUGCGCCga -5'
19254 5' -61.6 NC_004684.1 + 42415 0.67 0.425076
Target:  5'- gGAUGCCGCCcugggacACCGGaagCGugGCcgggucGGCa -3'
miRNA:   3'- gUUGCGGCGG-------UGGCCa--GCugCG------CCGa -5'
19254 5' -61.6 NC_004684.1 + 51215 0.67 0.420609
Target:  5'- uCGugGCCagcaggaucaccuugGCCaucgGCCGGUCGAUGCcGCa -3'
miRNA:   3'- -GUugCGG---------------CGG----UGGCCAGCUGCGcCGa -5'
19254 5' -61.6 NC_004684.1 + 4291 0.67 0.417056
Target:  5'- cUggUGCUGCCACaCGaGUgGgACGCGGUg -3'
miRNA:   3'- -GuuGCGGCGGUG-GC-CAgC-UGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 30173 0.67 0.408255
Target:  5'- uCAACGCCGUCGgCGG-CGAgcugGUGGCc -3'
miRNA:   3'- -GUUGCGGCGGUgGCCaGCUg---CGCCGa -5'
19254 5' -61.6 NC_004684.1 + 37935 0.67 0.408255
Target:  5'- -cAUGCaCGCC-CUGcUCGACGCGGUg -3'
miRNA:   3'- guUGCG-GCGGuGGCcAGCUGCGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.