miRNA display CGI


Results 21 - 40 of 226 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19254 5' -61.6 NC_004684.1 + 4011 0.74 0.137351
Target:  5'- -uACGCCGCCAUCGGcUGGCGCgucGGCc -3'
miRNA:   3'- guUGCGGCGGUGGCCaGCUGCG---CCGa -5'
19254 5' -61.6 NC_004684.1 + 4164 0.67 0.382559
Target:  5'- cCGACGCCcggcaacgaGCCGCCGGUggccgagaaGAUGgGGCc -3'
miRNA:   3'- -GUUGCGG---------CGGUGGCCAg--------CUGCgCCGa -5'
19254 5' -61.6 NC_004684.1 + 4291 0.67 0.417056
Target:  5'- cUggUGCUGCCACaCGaGUgGgACGCGGUg -3'
miRNA:   3'- -GuuGCGGCGGUG-GC-CAgC-UGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 4457 0.72 0.196801
Target:  5'- -cGCGCCGCgCGCUGGUCGGCuucgucacCGGCc -3'
miRNA:   3'- guUGCGGCG-GUGGCCAGCUGc-------GCCGa -5'
19254 5' -61.6 NC_004684.1 + 4680 0.66 0.481731
Target:  5'- uGugGCCGaCUACCGcaaGUCGAccccCGUGGCc -3'
miRNA:   3'- gUugCGGC-GGUGGC---CAGCU----GCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 4762 0.66 0.462735
Target:  5'- -uACGCCGCCuucgugcgcgucGCCaGcaagcgccUCGGCGCGGUg -3'
miRNA:   3'- guUGCGGCGG------------UGGcC--------AGCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 4903 0.67 0.391004
Target:  5'- ---gGUCGCCACCGGccUCG--GCGGCa -3'
miRNA:   3'- guugCGGCGGUGGCC--AGCugCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 5902 0.73 0.177828
Target:  5'- gAGCGCCGCCGCCu----GCGCGGCg -3'
miRNA:   3'- gUUGCGGCGGUGGccagcUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 6092 0.69 0.297932
Target:  5'- gCGGCGgUGCUGCCGGaaaUCGACcCGGCg -3'
miRNA:   3'- -GUUGCgGCGGUGGCC---AGCUGcGCCGa -5'
19254 5' -61.6 NC_004684.1 + 6281 0.66 0.481731
Target:  5'- gAGCGCgGCgaacuguaGCCGcGUCGACcggugGCGGCg -3'
miRNA:   3'- gUUGCGgCGg-------UGGC-CAGCUG-----CGCCGa -5'
19254 5' -61.6 NC_004684.1 + 6328 0.7 0.277522
Target:  5'- aCAAUGCCGCCACCGGcccguauugUUGAaccuguaCGGCg -3'
miRNA:   3'- -GUUGCGGCGGUGGCC---------AGCUgc-----GCCGa -5'
19254 5' -61.6 NC_004684.1 + 6481 0.69 0.319487
Target:  5'- gCGACGCCGUgGCCgagauGGUCGAUGaacuggaGGCc -3'
miRNA:   3'- -GUUGCGGCGgUGG-----CCAGCUGCg------CCGa -5'
19254 5' -61.6 NC_004684.1 + 6697 0.67 0.382559
Target:  5'- uCGACcUgGCCACC-GUCGGCGCGaGCa -3'
miRNA:   3'- -GUUGcGgCGGUGGcCAGCUGCGC-CGa -5'
19254 5' -61.6 NC_004684.1 + 7503 0.67 0.391004
Target:  5'- -uGCGCCGCCGCaucggGGUgGACcugccCGGCa -3'
miRNA:   3'- guUGCGGCGGUGg----CCAgCUGc----GCCGa -5'
19254 5' -61.6 NC_004684.1 + 7573 0.66 0.453387
Target:  5'- uGGCGCUgguGCgGCUGGU--GCGCGGCa -3'
miRNA:   3'- gUUGCGG---CGgUGGCCAgcUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 7937 0.67 0.39957
Target:  5'- aCAuCGCCGCCgaccggcgcacACCGGUgGGCaaggccgccagGCGGCc -3'
miRNA:   3'- -GUuGCGGCGG-----------UGGCCAgCUG-----------CGCCGa -5'
19254 5' -61.6 NC_004684.1 + 8712 0.66 0.481731
Target:  5'- ---aGCCGCa--CGGUCGACGgGGa- -3'
miRNA:   3'- guugCGGCGgugGCCAGCUGCgCCga -5'
19254 5' -61.6 NC_004684.1 + 8867 0.83 0.033031
Target:  5'- cCAACGCCGCCGCCaacGGcacgcuggaccgcagUCGGCGCGGCa -3'
miRNA:   3'- -GUUGCGGCGGUGG---CC---------------AGCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 9049 0.69 0.319487
Target:  5'- gCAACGCCagcaggGCCACCGGgcgcgccaUGACcCGGCg -3'
miRNA:   3'- -GUUGCGG------CGGUGGCCa-------GCUGcGCCGa -5'
19254 5' -61.6 NC_004684.1 + 9864 0.7 0.270971
Target:  5'- ---aGCUGCCGCCGGauccCGACGCcGCg -3'
miRNA:   3'- guugCGGCGGUGGCCa---GCUGCGcCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.